BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0063.p (343 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb... 618 e-178 gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4... 270 2e-73 gi|300310642|ref|YP_003774734.1| electron transfer component of ... 144 8e-36 >gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 618 bits (1594), Expect = e-178, Method: Compositional matrix adjust. Identities = 289/340 (85%), Positives = 313/340 (92%) Query: 1 MSFQVTVQPSGHQFTCDEGETILTAAIRAGVGLPYGCKNGACSSCKGKLVEGSVTHGPHQ 60 MSFQVTVQPSG QFTCD E+ILTAAIRAGVGLPYGCKNGACSSCKGKLV G V HGPHQ Sbjct: 1 MSFQVTVQPSGRQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLVSGQVEHGPHQ 60 Query: 61 ERALSAQDESLGFSLFCCARPNSDVVIEAREVAGIGDFPVKKMPGRVAKLDKVADDVIIL 120 ERALSA ++ LG +LFC A+P SDV IEAREVAG GD PV+K+P RVAKLDKVADDVI+L Sbjct: 61 ERALSAHEQQLGMALFCVAKPQSDVTIEAREVAGAGDIPVRKLPVRVAKLDKVADDVIVL 120 Query: 121 SLQLPANDRLQYKAGQYVEFMLRDGKRRSYSMANAPHKDEHLTLHIRHMPGGLFTDQVFS 180 SLQLPANDRLQYKAGQYVEF+LRDGKRRSYSMA APHKDEH++LHIRH+PGGLFTDQVF+ Sbjct: 121 SLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMATAPHKDEHMSLHIRHLPGGLFTDQVFT 180 Query: 181 TLKERDILRFEGPLGTFFLREDSDKPIVLLASGTGFAPIKAIVEQLEHAKSTRPVTLYWG 240 TLKERDILR EGPLGTFFLREDSDKPI+LLASGTGFAPIKAIVEQLEHA S RPVTLYWG Sbjct: 181 TLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEHAGSKRPVTLYWG 240 Query: 241 GRRPQDLYMDELCKTWAQSLPNFKYVPVISNAQPEDNWSGRAGFVHQAVIDDQPDLSGYQ 300 GRRPQDLYMD LC+ W Q+LPNFKYVPV+SNAQ EDNWSGR GFVH+AV++D PDLSG+Q Sbjct: 241 GRRPQDLYMDALCQQWEQTLPNFKYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGHQ 300 Query: 301 VYACGAPIVVESAQRDFVAKCGLPEEEFYADSFTSAADLA 340 VYACGAPIVVESAQRDF A+CGLP++EFYADSFTS ADLA Sbjct: 301 VYACGAPIVVESAQRDFSAQCGLPQDEFYADSFTSEADLA 340 >gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase [Herbaspirillum seropedicae SmR1] Length = 360 Score = 270 bits (689), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 130/240 (54%), Positives = 170/240 (70%), Gaps = 4/240 (1%) Query: 101 KKMPGRVAKLDKVADDVIILSLQLPANDRLQYKAGQYVEFMLRDGKRRSYSMAN-APHKD 159 +++ + L + A DV IL L+ A L Y+AGQY++ +L DG+RRSYSMA A Sbjct: 122 QQVQATLESLTRAAPDVAILRLRCAAP--LSYRAGQYIDLLLEDGQRRSYSMATYAKDGS 179 Query: 160 EHLTLHIRHMPGGLFTDQVFSTLKERDILRFEGPLGTFFLREDSDKPIVLLASGTGFAPI 219 + L LH+RH+PGGLFTD++F+ ++ EGP G+FF+RE + +P++LLASGTGFAP+ Sbjct: 180 DLLELHVRHLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGT-QPLILLASGTGFAPV 238 Query: 220 KAIVEQLEHAKSTRPVTLYWGGRRPQDLYMDELCKTWAQSLPNFKYVPVISNAQPEDNWS 279 KA+VE+ + STR + LYWGGRR DLY+D LC+ WA SLP F YVPV+S A WS Sbjct: 239 KALVEEAIASGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFDYVPVLSEADATSGWS 298 Query: 280 GRAGFVHQAVIDDQPDLSGYQVYACGAPIVVESAQRDFVAKCGLPEEEFYADSFTSAADL 339 GR G VH+AV+ D P + YQVYACGAP+VVESA+RDF A CGL E F+AD+F S ADL Sbjct: 299 GRTGLVHRAVMQDVPAMQQYQVYACGAPVVVESARRDFTAACGLSETAFFADAFVSRADL 358 >gi|300310642|ref|YP_003774734.1| electron transfer component of chlorobenzoate 1,2-dioxygenase [Herbaspirillum seropedicae SmR1] Length = 351 Score = 144 bits (364), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 103/324 (31%), Positives = 155/324 (47%), Gaps = 18/324 (5%) Query: 16 CDEGETILTAAIRAGVGLPYGCKNGACSSCKGKLVEGSVTHGP-HQERALSAQDESLGFS 74 C E +L AA R + LP C +G C +CK + G G + + ALS+ + G Sbjct: 20 CGAKEKVLDAAFRNRINLPMDCSDGVCGTCKCRAESGLYDLGDDYIDDALSSDEAGAGMV 79 Query: 75 LFCCARPNSDVVIEAREVAGIGDFPVKKMPGRVAKLDKVADDVIILSLQLPANDRLQYKA 134 L C P SD VI + G+VA L + L L+ PAN + Sbjct: 80 LTCQMVPQSDCVIAVPVASTACKTGTASFTGKVAGLSDLGGAAFELVLEAPANAP-AFLP 138 Query: 135 GQYVEFML-RDGKRRSYSMANAPHKDEHLTLHIRHMPGGLFTDQVFSTLKERDILRFEGP 193 GQYV + G+ RSYS ++ P ++ I+++PGGL ++ + + E L GP Sbjct: 139 GQYVNIGVPGSGQHRSYSFSS-PSGASRMSFLIKNVPGGLMSNWL-AGASEGATLELTGP 196 Query: 194 LGTFFLREDSDKPIVLLASGTGFAPIKAIVEQLEHAKSTRPVTLYWGGRRPQDLYMDELC 253 LG+F+LR +P+++LA GTG AP +++E+L +PV L +G R QDL + E Sbjct: 197 LGSFYLRP-VKRPVLMLAGGTGLAPFLSMLEELAQQGLDQPVHLIYGVTRDQDLVLVERL 255 Query: 254 KTWAQSLPNFKYVPVISNAQPEDNWSGRAGFVHQ----AVIDDQPDLSGYQVYACGAPIV 309 + A LP F + +++ R G+V Q AV+ D VY CG P + Sbjct: 256 QALADRLPGFSFTTCVADPA---TTHARQGYVTQHMPAAVLHD----GNVDVYLCGPPPM 308 Query: 310 VESAQRDFVAKCGLPEEEFYADSF 333 VE+ Q+ F A G+ FY + F Sbjct: 309 VEAVQKHFQAT-GMQPASFYYEKF 331 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,138,925 Number of extensions: 49867 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 3 Length of query: 343 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 257 Effective length of database: 1,212,660 Effective search space: 311653620 Effective search space used: 311653620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)