BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0051.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 94 1e-20 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 69 4e-13 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 60 2e-10 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 59 3e-10 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 58 5e-10 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 1 MNDAVILGWGRSAVTPLGGALSQLQPHEIAAPVVQGILQRFGIPLNAIDAVIAGNAM--G 58 M+D VI+ R+A+ GGALS++ ++ A V++ +L + GI AI VI G + G Sbjct: 1 MDDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG 60 Query: 59 AGGNPARMLALAAGFDDRTPALSVDSQCCAGLDAIALAHGMLASGNADVVIAGGVEAWSR 118 G NPAR + +G D PA V C +GL A+ LA + G+A +VIAGG E S Sbjct: 61 LGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 Query: 119 AP--IRQHRPRHAGEAATIYDSPAFAP--DPARDPGMLLAAARHALKAGITREQQEAWAV 174 +P + R A + D+ D M + A A K I+RE+Q+A+A Sbjct: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAA 180 Query: 175 QSHARAVAART--HIRDEIIAI 194 S +A AA+ +DEI+ I Sbjct: 181 ASQNKAEAAQKAGKFKDEIVPI 202 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 23/244 (9%) Query: 1 MNDAVILGWGRSAVTPLGGALSQLQPHEIAAPVVQGILQRF-GIPLNAIDAVIAGNAMGA 59 M D I R+ + GGAL ++ ++ A ++ +++R + A+D VI G A A Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 60 GG---NPARMLALAAGFDDRTPALSVDSQCCAGLDAIALAHGMLASGNADVVIAGGVEAW 116 G N ARM L AG P +++ C +G+DA+ A + SG ++IAGGVE+ Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 117 SRAPIRQHRPRHA-GEAATIYDSP-------AFAPDPARDPGMLLAAARHALKAGITREQ 168 +RAP + A A I D+ A M A A+ ++R Sbjct: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRAD 180 Query: 169 QEAWAVQSHARAVAARTH--IRDEIIAIG---------AATQDSYPRALDQRHLARMPVV 217 Q+ +AV+S A+A AA+ + + EI+ + TQD +PRA LAR+ V Sbjct: 181 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGV 240 Query: 218 ALSD 221 D Sbjct: 241 VKPD 244 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 10/141 (7%) Query: 3 DAVILGWGRSAVTPLGGALSQLQPHEIAAPVVQGILQRF-GIPLNAIDAVIAGNAMGAGG 61 DA+ +GR GGAL ++ ++AA ++ +++R G+ + ++ ++ G A AG Sbjct: 7 DAIRTPFGR-----YGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61 Query: 62 ---NPARMLALAAGFDDRTPALSVDSQCCAGLDAIALAHGMLASGNADVVIAGGVEAWSR 118 N ARM L AG P +V+ C + LDA+ +A + SG ++IAGGVE+ +R Sbjct: 62 DNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 Query: 119 APIRQHRPRHA-GEAATIYDS 138 AP + A +A I+D+ Sbjct: 122 APFVMGKAESAFARSAAIFDT 142 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 15/190 (7%) Query: 5 VILGWGRSAVTPLGGALSQLQPHEIAAPVVQGILQRFGIP---LNAIDAVIAGNAM--GA 59 VI+ R+A+ GAL+ L + A + LQR + + I+ V G + G Sbjct: 7 VIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQAGL 66 Query: 60 GGNPARMLALAAGFDDRTPALSVDSQCCAGLDAIALAHGMLASGNADVVIAGGVEAWSRA 119 G PAR AL AG +++ C + + A+ L H + +G+A +V+AGG+E+ S A Sbjct: 67 GQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMSNA 126 Query: 120 PI------RQHRPRHAGEAATIY---DSPAFAPDPARDPGMLLAAARHALKAGITREQQE 170 P R +R H ++ A++ D R M A A + G TR QQ+ Sbjct: 127 PYLLPKARRGYRLGHDRLLDHMFLDGLEDAYS-DQYRGRLMGTFAEDCASEFGFTRAQQD 185 Query: 171 AWAVQSHARA 180 A+AVQS RA Sbjct: 186 AFAVQSTLRA 195 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 58.2 bits (139), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 20/193 (10%) Query: 1 MNDAVILGWGRSAVTPLG----GALSQLQPHEIAAPVVQG-ILQRFGIPLNAIDAVIAGN 55 + DA I+ R TP+G G +P ++ +Q + Q G+ I+ I G Sbjct: 5 LQDAYIVAATR---TPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGC 61 Query: 56 AM--GAGG-NPARMLALAAGFDDRTPALSVDSQCCAGLDAIALAHGMLASGNADVVIAGG 112 + GA G N AR L AG + ++++ C +G+ AIA+A + G ADV+IA G Sbjct: 62 SFPEGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAG 121 Query: 113 VEAWSRAPIRQHRPRHAGEAATIYDSPAFA-PDPARDPGMLLAAARHALKAGITREQQEA 171 E+ S P+ P + AF + GM L A + A + ++RE Q+ Sbjct: 122 AESMSMVPMMGFHPS--------ININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQDE 173 Query: 172 WAVQSHARAVAAR 184 +++ SH +A+AA+ Sbjct: 174 FSLASHQKAIAAQ 186 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 790,651 Number of extensions: 33322 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 6 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)