BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0039.p (283 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312232|ref|YP_003776324.1| signal transduction protein [He... 132 3e-32 gi|300311938|ref|YP_003776030.1| hypothetical protein Hsero_2626... 116 2e-27 gi|300310564|ref|YP_003774656.1| regulator of the two-component ... 71 1e-13 gi|300311595|ref|YP_003775687.1| two component response regulato... 69 6e-13 >gi|300312232|ref|YP_003776324.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 11/260 (4%) Query: 16 LPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQSKIGSIPHA 75 LP++P +V E+I + +N+ V +A+K++ DQ L+AK+LRLANSS+Y + IG++ A Sbjct: 13 LPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTIGTVDDA 72 Query: 76 IAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAAHCNANQDQS 135 + +LGF +VR+LV++ + +F G DL FW++++ TAL +K +A N D + Sbjct: 73 VLMLGFMTVRTLVVSTGMAGSFKKLPGVDLK--LFWRYSLDTALVAKWLAKRGKLNSDFA 130 Query: 136 FIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEIHVFGIDHKTAGKAVLEYWK 195 F GL+H IG+LV+ P + V + + L E FG D G + W+ Sbjct: 131 FTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVGAELARRWR 190 Query: 196 FPAAIVGTLVSGKEESPAQGHAAAIAAVADAIAYALDLSGGQY---DRVPSIPVSDWDRL 252 FP + + + P QG AA+ A+ QY + + P +RL Sbjct: 191 FPDEFAKVIEAFPQ--PLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATFPAEVAERL 248 Query: 253 ALKESVLLEIFATTETQFEE 272 ++ LE F EE Sbjct: 249 GVR----LETFTQEMPPLEE 264 >gi|300311938|ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspirillum seropedicae SmR1] Length = 290 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 111/210 (52%), Gaps = 18/210 (8%) Query: 7 QDIADAVLRLPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQ 66 + + D +LP +P +V +L+ + + +D+ H +AQ+I+ D L+AKVLRLANS+F+ Sbjct: 4 KSLVDQPGKLPTVPKVVQQLMASFNAEDISAHEIAQQIATDPALSAKVLRLANSAFFHAS 63 Query: 67 SKIGSIPHAIAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAA 126 IG++ A+ +LGF VR+LVL +V F N G DL FW+H + TA+ ++ +A Sbjct: 64 RTIGTVDDALRILGFIMVRNLVLGNGMVAAFKNTRGMDLH--QFWRHTLYTAVAARWLAM 121 Query: 127 HCNA----NQDQSFIAGLLHNIGRLVL-----ATCSPL-RYRDVLQRCAQHNEDLLAAEI 176 H N D F G++H IG+L L +PL R+ +VL + D E Sbjct: 122 HAGMVGEDNGDAVFTVGMMHGIGQLQLHAVAANAVAPLDRHSNVL------DSDRAEREK 175 Query: 177 HVFGIDHKTAGKAVLEYWKFPAAIVGTLVS 206 +G + + W FP A+V L S Sbjct: 176 EAWGFHYADVSAELAAIWHFPDALVTALRS 205 >gi|300310564|ref|YP_003774656.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 3/184 (1%) Query: 16 LPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQSKIGSIPH- 74 LP+ + L ++ + D L + D L+ +++R+ N I S+ Sbjct: 19 LPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRIVNVLNAQRVRPIASVSMD 78 Query: 75 AIAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAAHCN-ANQD 133 ++ ++G +VR L LA ++ +T A + + FW H+ A ++ + + A Sbjct: 79 SLLLVGLQAVRQLALALSLAETRAPASCANFSLPAFWAHSFAMACSAQAVTSQLRVAPLG 138 Query: 134 QSFIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEIHVFGIDHKTAGKAVLEY 193 + F GLL NIG+L LA+ P Y +L R A A E +FG +H A+++ Sbjct: 139 EMFTTGLLANIGKLTLASAQPTGYSALLTR-ALDAPARRAMEQSLFGFNHLNIAAALMQD 197 Query: 194 WKFP 197 WK P Sbjct: 198 WKIP 201 >gi|300311595|ref|YP_003775687.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 68.6 bits (166), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 10/222 (4%) Query: 16 LPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQSKIGSIP-H 74 LPA + L+++ +D+ L ++ D L +++++AN + S+ Sbjct: 19 LPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQIANIPNINKGRMVASVNVE 78 Query: 75 AIAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAAHCN-ANQD 133 + ++G ++VR + LA ++ ++ + D+ FW + A + + A Sbjct: 79 LLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTAMACAGQALGDLLQVAPPA 138 Query: 134 QSFIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEIHVFGIDHKTAGKAVLEY 193 + F GLL IG+L LA+ P RY ++L A+ + L E FG DH A+++ Sbjct: 139 EMFTIGLLAGIGQLGLASARPKRYGELLLAGAK-DAQLRVQERESFGFDHLALAAAMMQD 197 Query: 194 WKFPAAIVGTLV-------SGKEESPAQGHAAAIAAVADAIA 228 W FP ++ SG EE Q + +A +A Sbjct: 198 WHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVA 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 784,504 Number of extensions: 28672 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 4 Length of query: 283 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 199 Effective length of database: 1,222,130 Effective search space: 243203870 Effective search space used: 243203870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)