BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0033.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311162|ref|YP_003775254.1| amidase family protein [Herbasp...   267   4e-73

>gi|300311162|ref|YP_003775254.1| amidase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  267 bits (682), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/166 (76%), Positives = 146/166 (87%)

Query: 1   VIVESKIDAFSELASINAKGGFTAAEAWTWHRKLIAEREAAYDQRVVSRIKRGKDMGAAD 60
           +IVE+++ AF+ LA+INAKGGFTAAEA+ WHR LIAE  A YDQRVVSRI RGKDM AAD
Sbjct: 283 MIVEAEVPAFNALAAINAKGGFTAAEAYAWHRALIAENAAGYDQRVVSRILRGKDMSAAD 342

Query: 61  LLDVIHSRRRWIAAVERQLAGFDAMIMPTVPIVAPKIADLQASDDAYYAANGLILRNPTM 120
           LLDV+H+R RWIA VE QLAG+DA++MPTVPIVAP+IA+LQASDDAYY ANG +LRNPT+
Sbjct: 343 LLDVLHARPRWIAQVEAQLAGYDALVMPTVPIVAPRIAELQASDDAYYGANGKMLRNPTL 402

Query: 121 INFLDGCAISLPCHASGNAPVGLSLAAPGGHDHRLLSMALAVEAAL 166
           INFLDGCA+SLPCHA G+APVGLSLAA GG D RLLS+ LAVEA L
Sbjct: 403 INFLDGCALSLPCHAPGSAPVGLSLAACGGQDKRLLSIGLAVEALL 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,845
Number of extensions: 22089
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)