BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0023.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 890 0.0 gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip... 115 8e-27 gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter perip... 102 1e-22 gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 96 8e-21 gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter perip... 78 1e-15 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/521 (82%), Positives = 476/521 (91%) Query: 1 MTTQFSRRGATAIRWLALGAIGTTLQFAAVHAWAAKSVTLAVASTFTTMDPYDANDTLSL 60 M+T + +G +A +WLA+ A+GTTLQFAA HA+AAK+VTLAV STFTT+DPYDANDTLSL Sbjct: 1 MSTTATHKGVSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYSTFTTLDPYDANDTLSL 60 Query: 61 AVTKSFYQGLFAFDKDLKLVNVLAEGYLVSKDGLEYTIRLRQGVKFHDGTTFKADAVKAV 120 ++ KSFYQGLF FDKD+KL+ VLAEGYLVSKDGLEYTIRL+QGVKF DGT FKADAVKAV Sbjct: 61 SMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAV 120 Query: 121 MDRVTNPDNKLKRYVLFNRVARTEVLNDYTVKIVLKEPFSAFINVLAHPSAVMISPAALK 180 DRVTNPDNKLKRY LFNR+A+TE+LNDYTVK+VLKEPFSAFINVLAHPSAVMISP ALK Sbjct: 121 FDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALK 180 Query: 181 QYGNKDIAFHPVGTGPFKFVEWKQTDYMKAEKFSGYWKAGYPKVDEVIWKPVVDNNSRSA 240 QYGNKDIAFHPVGTGPFKFVEWKQTDY+K KF GYWK GYPKVDE+IWKPVVDNN+RSA Sbjct: 181 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWKPVVDNNARSA 240 Query: 241 MMQTGEANFTFPLPYEQAELLKGKGALDIVTGPSIIQRYMSMNVKQKPFDNVKVRQAINY 300 MMQTGEA FT+PLPYEQA+LLK K LD+V PSIIQRYMSMN KQKPFDN KVR+AINY Sbjct: 241 MMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINY 300 Query: 301 AINKDALVKVAFSGYAAPMDGVLPQGVDYAVKTGPWPYDVKKAKALLAEAGYPNGFETEL 360 AINK ALVKVAF+GYA PMDGV+PQGVDYA KTGPWPYDVKKAKALLAEAGYPNGFETEL Sbjct: 301 AINKQALVKVAFNGYAVPMDGVVPQGVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETEL 360 Query: 361 WSAYTHTTALKIIQFLQQQLAQVGIKVKVQALEAGQRVEKVETAQNPDTAPVRLYYSGWS 420 WSAYTH+TA+KI+QFLQQQLAQVGIK K+QALEAGQRVE+VE+ Q+P TAPVRL Y GWS Sbjct: 361 WSAYTHSTAVKIVQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWS 420 Query: 421 SSTGEADWGLRPLLASEAFPPKLYNTAYYKSDKVDSDIAQALTVTDRTQKAALYKDAQTE 480 SSTGEADW LRPLLASE+FPP+LYNTAYYK+DKVD+DIA+ALT+T+R K ALYKDAQ E Sbjct: 421 SSTGEADWALRPLLASESFPPRLYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQE 480 Query: 481 IWKDAPWAFLVTEKVLYARSKNLKGVYVMPDASFNFDEIEL 521 IWKDAPWAFLVTEK+LYAR+KNLKGVYVMPD + F+ IEL Sbjct: 481 IWKDAPWAFLVTEKLLYARNKNLKGVYVMPDQAIEFENIEL 521 >gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 115 bits (288), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 120/428 (28%), Positives = 197/428 (46%), Gaps = 51/428 (11%) Query: 98 IRLRQGVKFHDGTTFKADAVKAVMDRVTNPDNKLKRYVLFNRVARTEVLNDYTVKIVLKE 157 + LRQGV+F +G F AD V + +P++K + + + L DY V+I LK Sbjct: 96 LDLRQGVQFQNGDKFSADDVVFTFNYAVSPESKAVTRQNTDWIKSVDKLADYKVRINLKG 155 Query: 158 PFSAFINVLAHPSAVMISPAA-LKQYGNKDIAFHPVGTGPFKFVEWKQTDYMKAEKFSGY 216 PF A + LA P + I PAA K+ G + + P+GTGP+K + K GY Sbjct: 156 PFPAALEYLAGP--LPIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGVTLVKNPGY 213 Query: 217 WK---AGYPKVDEVIWKPVVDNNSRSAMMQTGEANFTFPLPYEQAELLKGKGALDIVTGP 273 +K G P + + + + D +R+A + TG ++ + +P +QA+ LK L + +G Sbjct: 214 FKDSPQGQPTIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGE 273 Query: 274 SIIQRYMSMNVK-----QKPFDNVKVRQAINYAINKDALVKVAFSGYAAPMDGVLPQ--- 325 ++ +++++ PF +V+VRQA+N+AIN+ G + P+ + Sbjct: 274 TMRIGFITLDTTGTSAPNSPFKDVRVRQAVNHAINRKGYADNLMRGGSQPVYTACFRTQF 333 Query: 326 GVDY--AVKTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHTTALKIIQFLQQQLAQV 383 G D A+K + Y+ KAK LLA AGYPNGF+T++++ A II L +V Sbjct: 334 GCDSNAAIK---YDYNPAKAKELLAAAGYPNGFDTDIYAYREREIAEAII----GDLRKV 386 Query: 384 GIKVKVQALEAGQRVEKVETAQNPDTAPVRLYYSGWSSSTGEADWGLRPLLASEAFPPKL 443 GI+ ++ + + ++T P+ Y WG + + AF Sbjct: 387 GIRARLHYM----KFAALQTEYRSGKTPMSFY-----------SWGSFSMNDTSAFA--- 428 Query: 444 YNTAYYK--SDKVDSD------IAQALTVTDRTQKAALYKDAQTEIWKDAPWAFLVTEKV 495 Y+K +D + D + A T D + A Y AQ I K A A + + Sbjct: 429 --GVYFKGGADDITKDPQLQQYLQTADTSIDPAVRKANYSKAQELISKQAYVAPMFSYST 486 Query: 496 LYARSKNL 503 YA + L Sbjct: 487 YYAYNAQL 494 >gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] Length = 540 Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 128/531 (24%), Positives = 216/531 (40%), Gaps = 52/531 (9%) Query: 5 FSRRGAT----AIRWLALGAIGTTLQFAAVHAWAAKS-----VTLAVASTFTTMDPYDAN 55 FSRR A + +G G +V A K + +ST T+DP Sbjct: 28 FSRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQTGKRGGKMRIATQTSSTADTLDPAKTA 87 Query: 56 DTLSLAVTKSFYQGLFAFDKDLKLVNVLAEGYLVSKDGLEYTIRLRQGVKFHDGTTFK-A 114 + FY GL D L VLAE +++ D + +T++LR+GV FHDG A Sbjct: 88 HSTDYTRVHMFYNGLTKLDGKLGPQMVLAE-EMLTNDAVTWTVKLRKGVNFHDGKPLTPA 146 Query: 115 DAVKAVMDRVTNPDNKLKRYVLFNRVARTEVLNDYTVKIVLKEPFSAFINVLAHPSAVMI 174 D V ++M R +P K V+ ++ + V+I L + +LA ++I Sbjct: 147 DVVYSIM-RHKDPATASKVKVVADQFESVKATGPNEVQIKLTSANADLPVILATAQFLII 205 Query: 175 SPAALKQYGNKDIAFHPVGTGPFKFVEWKQTDYMKAEKFSGYWKAGYPKVDEVIWKPVVD 234 + G + + P GTG FK E+ + YWK G P +DEV + D Sbjct: 206 ------RDGTTNFS-TPNGTGAFKLKEFTPGVRTIGVRNENYWKPGLPYLDEVELFGIPD 258 Query: 235 NNSRSAMMQTGEANFTFPLPYEQAELLKGKGALDIVTGPSIIQRYMSMNVKQKPFDNVKV 294 +R + +G+ ++ + +K ++ S + M P +++ Sbjct: 259 EAARVNALLSGDVHWINDVNSRSTGRVKNTPGYTVMETKSGQYTDLVMRQDVAPGNSMDF 318 Query: 295 RQAINYAINKDALVKVAFSGYAA-----PMDGVLPQGVDYAVKTGPWPYDVKKAKALLAE 349 + Y ++++ + AF GYA P+D P Y PYD KAK L + Sbjct: 319 TLGMKYLLDREQIKMAAFRGYAVIANDQPID---PTNRFYFAGLPQRPYDPDKAKFHLGK 375 Query: 350 AGYPNGFETELWSAYTHTTALKIIQFLQQQLAQVGIKVKVQALEAGQRVEKVETAQNPDT 409 AG G + ++ T ++ + +QQ A++G+K+ V+ + Sbjct: 376 AGVL-GSTIPIVASVAATGSVDMAVLMQQSAAKIGLKLDVKRV----------------- 417 Query: 410 APVRLYYSG-WSS-STGEADWGLRP---LLASEAFPPKL-YNTAYYKSDKVDSDIAQALT 463 P Y+S W G + RP +L ++ F +N + +K+ + D + A Sbjct: 418 -PADGYWSNQWMKVPVGFGNINPRPSADILLTQFFKSDAQWNESGWKNPQFDQLVVAARG 476 Query: 464 VTDRTQKAALYKDAQTEIWKDAPWAFLVTEKVLYARSKNLKGVYVMPDASF 514 TD T++ A+Y D QT I + V L S +KG+ +P +F Sbjct: 477 ETDFTKRKAMYADLQTMIHEKCGLGIPVFIINLEGISTKVKGIDPVPLGAF 527 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 117/500 (23%), Positives = 205/500 (41%), Gaps = 50/500 (10%) Query: 36 KSVTLAVASTFTTMDPYDANDTLSLAVTKSFYQGLFAFDKDLKLVNVLAEGYLVSKDGLE 95 +++ +A A +++DP N +V F+ L D N L G VS ++ Sbjct: 29 QNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQND-----YNKLVPGLAVSWKNID 83 Query: 96 ---YTIRLRQGVKFHDGTTFKADAVKAVMDRVTNPDNKLKRYVLFNRVARTEVLND---Y 149 + +LR VK+ DG F AD V R + + + R + D Sbjct: 84 PKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTL 143 Query: 150 TVKIVLKEPFSAFINVLAHPSAVMISPAALKQYGNKDIAFHPVGTGPFKFVEWKQTDYMK 209 +K + P H + I + + N A +GTGP+KFV + D + Sbjct: 144 VIKTNIPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAV--IGTGPYKFVSYTPGDRVV 201 Query: 210 AEKFSGYWKAGYPKVDEVIWKPVVDNNSRSAMMQTGEANFTFPLPYEQAELLKGKGALDI 269 ++ YW G P ++V ++ + + +R+A + +G+ + + LK + + Sbjct: 202 MQRNDDYWN-GKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKV 260 Query: 270 V---------------TGPS-IIQRYMSMNVKQKPFDNVKVRQAINYAINKDALVKVAFS 313 GPS I + + P +V+VR+A++ AIN+ AL+ Sbjct: 261 YPYNGLRVLLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQ 320 Query: 314 GYAAPMDGVLPQGV-DYAVKTGPWPYDVKKAKALLAEAGYPNGFETELWSAY-THTTALK 371 G A + +P Y + P+D +AK LLA+AG+P+GF+ + + A + Sbjct: 321 GAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLADAGFPDGFKLTIHVPNDRYPQAPE 380 Query: 372 IIQFLQQQLAQVGIKVKVQALE---AGQRVEKVETAQNPDTAPVRLYYSGWSSSTGEADW 428 +Q + Q ++GIK +V+ L R K E A + W + TGEA + Sbjct: 381 TMQAVAQFWTRIGIKTQVEVLPWAAYSSRANKNEFA---------VSVLAWGNGTGEASY 431 Query: 429 GLRPLLASEAFPPK----LYNTAYYKSDKVDSDIAQALTVTDRTQKAALYKDAQTEIWKD 484 L +L S PK N +Y S VD +A + D ++ A+ + A + ++ Sbjct: 432 ALVNVLGS--VDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSEE 489 Query: 485 APWAFLVTEKVLYARSKNLK 504 L + ++A K LK Sbjct: 490 VGVIPLYHYQNIWAAKKGLK 509 >gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/360 (21%), Positives = 154/360 (42%), Gaps = 34/360 (9%) Query: 70 LFAFDKDLKLVNVLAEGYLVSKDGLEYTIRLRQGVKFHDGTTFKADAVKAVMDRVTNPDN 129 L D +L +A + VS DGL++ LR G+++HDG+ ++ A + R Sbjct: 84 LLEVDDAGQLQPSVASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACLQRAQARPG 143 Query: 130 KLKRYVLFNRVARTEVLNDYTVKIVLKEPFSAFINVLAHPSAVMISPAALKQYGNKDIAF 189 L+ +A V T+ +VL+ PF +L H + +++PA+ GN +A Sbjct: 144 VLR----LADIAALRV-EGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNV-VAI 197 Query: 190 HPVGTGPFKFVEWKQTDYMKAEKFSGYWKAGYPKVD--EVIWK----PVVDNNSRSAMMQ 243 +G+GPF+ + E+ +G D +V+ + V +R+ ++Q Sbjct: 198 --IGSGPFRIRSIALPQQFEVERVAGSVSGSGAGSDVGKVVQRARYISVSRAETRTLLVQ 255 Query: 244 TGEANFTFPLPYEQAELLKGKGALDIVTGPSIIQRYMSMNVKQKPFDNVKVRQAINYAIN 303 +G+A+ F L L+ +++ + +N +V+VR+AI+ I Sbjct: 256 SGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIE 315 Query: 304 KDALVKVAFSGYAAPMDGVLPQGVD--YAVKTGPWPYDVKKAKALLAEAGYPNGFETELW 361 ++ + + + P + + P ++++A++LL +AG+ G + + Sbjct: 316 REGIARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQARSLLDQAGWRPGSDG-VR 374 Query: 362 SAYTHTTALKIIQF------------LQQQLAQVGIKVKV-----QALEAGQRVEKVETA 404 AL + F LQ+++ Q+G+ V+V + AG R +++ A Sbjct: 375 RRDGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDIPAGHRSGQLQMA 434 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,583,305 Number of extensions: 63534 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 5 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)