BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0018.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311173|ref|YP_003775265.1| D-aminopeptidase [Herbaspirillu...   273   6e-75

>gi|300311173|ref|YP_003775265.1| D-aminopeptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  273 bits (698), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 134/193 (69%), Positives = 154/193 (79%), Gaps = 2/193 (1%)

Query: 1   VLGMMGGVAGDIDAVMMVGYHSRSQTGGILAHTINSFAFSRVWLNGAELGEAGIYGALAG 60
           VLGMMGGV  DIDAVM+VGYHSR+Q  GILAHT NSFAF+RVWL+G E+GEAG+YGALA 
Sbjct: 88  VLGMMGGVDHDIDAVMLVGYHSRAQGRGILAHTTNSFAFARVWLDGQEMGEAGLYGALAA 147

Query: 61  EYGVPVIFGSGDDAFVEETQPLFPQARFAEIKKAHGANSGDSLSPQQACALLEKTAQEAV 120
           E+G PVIFGSGDDAF+EE QPLF  A FAE KKA+GANSGDSL+PQQ+C LLE  AQ+AV
Sbjct: 148 EHGAPVIFGSGDDAFIEENQPLFAHAVFAETKKAYGANSGDSLTPQQSCTLLEARAQQAV 207

Query: 121 QA--ARATQMPKYRIEVPVTCRLQVQTPALTDLFCQLPIVERVDAVTLKFDAPSVEFVVR 178
               A    MP   +  P+ CRLQ QT AL DLF QLPI+ER D V+++FDAP+ E+ VR
Sbjct: 208 ATWLADPQTMPARPLRGPLRCRLQAQTVALADLFSQLPILERCDNVSVEFDAPTAEYAVR 267

Query: 179 VLNSLSAMSFMLR 191
           VLNSLSAMS MLR
Sbjct: 268 VLNSLSAMSAMLR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 606,664
Number of extensions: 24844
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)