BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0014.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313730|ref|YP_003777822.1| DeoR family transcription regul...   459   e-131
gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon re...    90   2e-19

>gi|300313730|ref|YP_003777822.1| DeoR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  459 bits (1182), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/261 (83%), Positives = 238/261 (91%)

Query: 46  MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105
           MINH RRKR+LSLL EH   +VEQ C  LNASAATVRRDI+WLAER+ML R RGGAERLA
Sbjct: 1   MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60

Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165
            KR+AF+LSGETFQ SL R PA+KRAIARHAA MC++GET+IINGGTTTF+MAE+LA K+
Sbjct: 61  QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120

Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225
           LKILTNSFLMAERLLTTSENQIIVPGGQ+YREQNVILSPF+NDITQHHYA KMFMG+YG+
Sbjct: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180

Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285
           SMLGLME DPLLIQAEKRLLGQAEQL+VL DSSKFSRKAGLILCGLNRV+CL+TDTG+SD
Sbjct: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240

Query: 286 AAVQMMEQAGVKVAAVAPESE 306
           AA QMMEQAGVKV  VAPE E
Sbjct: 241 AAAQMMEQAGVKVVTVAPEHE 261


>gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon
           repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 9/256 (3%)

Query: 45  SMINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERL 104
           +M+N  R++ +L  + +H   SVE+L Q LN +  TVRRD+  + + ++L R  GG   L
Sbjct: 16  TMLN-PRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLL 74

Query: 105 APKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFL-AH 163
           +   N      +            KR I R  A    DG ++I+N GTTT  +A  L  H
Sbjct: 75  SSTENIAYPQRQVMHAE------AKRRIGRTVAARVPDGCSLILNLGTTTEEVALALQQH 128

Query: 164 KQLKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVY 223
           K L ++TN+  +A  L +    ++I+ GG V      I+     D  +        +G+ 
Sbjct: 129 KNLHVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGIS 188

Query: 224 GLSMLGLM-EVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTG 282
            + M G++ + D   ++  + ++ Q+ Q+ ++ D+SKF R+A + +  L+++  L TD  
Sbjct: 189 SIEMDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAP 248

Query: 283 VSDAAVQMMEQAGVKV 298
                 +++ +  V+V
Sbjct: 249 PPPELAKLLAETDVEV 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 880,075
Number of extensions: 33491
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)