BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0008.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313724|ref|YP_003777816.1| L-fuculokinase [Herbaspirillum ...   571   e-164

>gi|300313724|ref|YP_003777816.1| L-fuculokinase [Herbaspirillum
           seropedicae SmR1]
          Length = 478

 Score =  571 bits (1471), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/455 (63%), Positives = 330/455 (72%), Gaps = 2/455 (0%)

Query: 8   FDIGKTNIKLSLVDAQGHELAVRRRANEVVQGGFYPHHDVDAIEAWLLSTLSELAQQAYI 67
           FDIGKTNIKL+LVD  G ELAVRRR N+  Q G YPHHDV AIEAWLL  L+ LA+Q  I
Sbjct: 23  FDIGKTNIKLTLVDEHGQELAVRRRPNQPRQDGPYPHHDVAAIEAWLLENLAALARQWRI 82

Query: 68  SAIVPVTHGATAALVDEHGLVLPIADYEQSFRTSSPSPEYEALRPAFDHTFSPSLGLGLN 127
            AIVPVTHGATAALVDE GLVLP+ADYE  F        YE+LRP F  + SP LG+GLN
Sbjct: 83  RAIVPVTHGATAALVDEAGLVLPVADYEHDFALPPAHRPYESLRPPFAQSASPLLGMGLN 142

Query: 128 LGRQLYWLQQTYPETFGRAHRLLMYPQYWAWRLCGVAAAEVTSLGCHTDLWQPSDGTYSS 187
           LGRQLYW  Q YP+ F RA  LLMYPQYW+WRL GVAA E++SLGCHTDLWQP    YSS
Sbjct: 143 LGRQLYWQSQRYPDAFARARYLLMYPQYWSWRLSGVAAGELSSLGCHTDLWQPGQQCYSS 202

Query: 188 IVASCGWTQLMPSLHPAWAELGCLHPHLVRQTGLPSDCRILCGIHDSNASLLRYLDRSDN 247
           ++A C WT LMP L  AW  LG L P L ++TGLP+DC +LCG+HDSNASLLRYL  +  
Sbjct: 203 LLAQCNWTPLMPPLRAAWERLGPLRPELAQRTGLPADCAVLCGVHDSNASLLRYLRGTGG 262

Query: 248 GPRVVLSTGTWLIAAALDGGLDCLREQSDMLANVNARGEAVACMRFMGGREFAELAGSTP 307
           GPR+VLS+GTWLIAAALDG +  LRE++DMLANVN  G  VACMRFMGGREFA++AG   
Sbjct: 263 GPRIVLSSGTWLIAAALDGCVSGLREEADMLANVNVLGAPVACMRFMGGREFAQIAGDD- 321

Query: 308 HVCNEADLQALVDSQSMALPCFSGCGGPFAGRQGHISGSVPETAAGRYALATLYCVLMTE 367
             C+   LQAL+D+Q  ALPCFS CGGPFAGR+G I G  P+    RYALATLYC LMT 
Sbjct: 322 LPCSAEQLQALIDAQVFALPCFSECGGPFAGRRGSIVGQAPQQPGSRYALATLYCALMTA 381

Query: 368 YCLEHLQASGPVVVEGSFTANPYFAPLLAATSGGREVFCSEDGSGTTMGGWILRHWREHP 427
           YCL+ L A G +VVEGSFTANP+FA LLAA    R V+ S D SGTT+GGW+L  W   P
Sbjct: 382 YCLDALDAPGEIVVEGSFTANPHFAALLAALV-SRTVYRSSDASGTTLGGWLLDRWERAP 440

Query: 428 HGAALPAPKAVAPLRLRGWESYRQAWRHAVTPLLR 462
             A LPA     PL LRG  +YR+ W   +  L R
Sbjct: 441 ETATLPALLPAEPLALRGLAAYREDWLRKLGELER 475


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,615,346
Number of extensions: 71018
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)