BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0005.p (423 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 706 0.0 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 213 2e-56 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 123 3e-29 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/416 (82%), Positives = 372/416 (89%), Gaps = 6/416 (1%) Query: 6 RHRQERRVAVTGMAGISPIGNDWRSAQEHLRSYRNAVVRMPEWDEYNGLHTRLGAPAAAF 65 R R ERRV VTGMAGISPIG DW SA L+S NAV RMP WDEY GLHTRLGAPAA F Sbjct: 3 RARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAAEF 62 Query: 66 ELSERYNRKSTRSMGRVALLATRASEWALADAGLLDDPLLRNGGIGIAYGSSAGTPSAVA 125 LSERYNRK+TRSMGRVAL+ATRASEWALADAGLLDDPLL++G +GIAYGSSAGTP+A+A Sbjct: 63 SLSERYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNAIA 122 Query: 126 DFSMLFTEKSTRNINANTYLKMMAHTAPVNMGVFFGVTGRIITTSSACTSGSQGIGYAYE 185 DF+M+F EK+TR+INANTYLKMMAHTAPVNMGVFFG+TGRIITTSSACTSGSQGIGYAYE Sbjct: 123 DFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYE 182 Query: 186 TIRSGRQIAMIAGGSEELCASEAAVFDTLYATSVRNDTPAITPSPFDEQRDGLVLGEGAG 245 TIRSGRQ+AM+AGG+EELCA+EAAVFDTLYATSVRNDTP +TPSPFD RDGLVLGEGAG Sbjct: 183 TIRSGRQLAMVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEGAG 242 Query: 246 TLILEDLEHARARGARIYAEIVGFGTNSDGSHVTNPNADTMKIAIDMALADAGLDAAAIG 305 +LILEDLEHA+ARGA I+AEIVGFGTNSDG+HVTNPNA TM+ AI MAL DAGL A+AIG Sbjct: 243 SLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPASAIG 302 Query: 306 YINAHGTGTKQGXGGGGGDVAESNATARVFGDKTPISSLKSYMGHTLGACGALEAWLSIE 365 YINAHGTGT+Q GDVAE+ ATARVFG TPISSLKSYMGHTLGACGALEAWLSIE Sbjct: 303 YINAHGTGTRQ------GDVAETQATARVFGKATPISSLKSYMGHTLGACGALEAWLSIE 356 Query: 366 MMHANWFAPTINLTRVDPECGQLDYIAGEGRRLECEYIMSNNFAFGGINTSLIFKR 421 MM WFAPTINL DP+CG+LDY+ G GR LECEY+MSNNFAFGGINTSLIFKR Sbjct: 357 MMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 213 bits (542), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/424 (34%), Positives = 215/424 (50%), Gaps = 19/424 (4%) Query: 5 LRHRQERRVAVTGMAGISPIGNDWRSAQEHLRSYRNAVVRMPEWDEYNGLHTRLGAPAAA 64 + +ERRV +TG+ ISP+GN+ ++ ++ + + ++D T Sbjct: 1 MSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVKG 59 Query: 65 FELSERYNRKSTRSMGRVALLATRASEWALADAGLL--DDPLLRNGGIGIAYGSSAGTPS 122 F + + K R M A A+ D+GL D+ R IG+ GS G Sbjct: 60 FNIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAER---IGVMIGSGIGGLP 116 Query: 123 AVADFSMLFTEKSTRNINANTYLKMMAHTAPVNMGVFFGVTGRIITTSSACTSGSQGIGY 182 + + T + R I+ + + N+ + FG+ G + +ACT+G IG Sbjct: 117 LIEETHAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGS 176 Query: 183 AYETIRSGRQIAMIAGGSEELCASEAAV--FDTLYATSVRNDTPAITPSPFDEQRDGLVL 240 A I G M+AGG+E S + F + A S RND PA P+D+ RDG VL Sbjct: 177 AARMIMYGDADVMVAGGAES-SVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVL 235 Query: 241 GEGAGTLILEDLEHARARGARIYAEIVGFGTNSDGSHVTNPNADTMKIAIDMALADAGLD 300 GEGAG ++LE+ EHA+ARGA+IYAE++GFG + D H+T PN D + + AL DAG++ Sbjct: 236 GEGAGVMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVN 295 Query: 301 AAAIGYINAHGTGTKQGXGGGGGDVAESNATARVFGD---KTPISSLKSYMGHTLGACGA 357 + Y+NAHGT T GD ES+A FGD K ++S KS GH LG G Sbjct: 296 PDEVQYLNAHGTSTPL------GDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGG 349 Query: 358 LEAWLSIEMMHANWFAPTINLTRVDPECGQLDYIAGEGRRLECEYIMSNNFAFGGINTSL 417 LE L++ +H PT+N+ DPEC LDY A + R ++ + + N+F FGG N +L Sbjct: 350 LETVLTVLAVHNQVSPPTMNIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTL 408 Query: 418 IFKR 421 + + Sbjct: 409 VIGK 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 130/274 (47%), Gaps = 29/274 (10%) Query: 156 MGVFFGVTGRIITTSSACTSGSQGIGYAYETIRSGRQIAMIAGGSEELCASEAAVFDTLY 215 + + G TG SSAC S + I A + G A++ GG + LC A F L Sbjct: 143 LQLTLGTTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALE 202 Query: 216 ATSVRNDTPAITPSPFDEQRDGLVLGEGAGTLILEDLEHARARGARIYAEIVGFGTNSDG 275 + S + +P R G+ +GEGA +L A ++ G+G +SD Sbjct: 203 SVSAQRC------NPLSLHRQGINIGEGAALFLLTREPAA--------VQLSGWGESSDA 248 Query: 276 SHVTNPNADT--MKIAIDMALADAGLDAAAIGYINAHGTGTKQGXGGGGGDVAESNATAR 333 H++ P+ + ++AI AL AGL A+ I YIN HGT T Q D ES Sbjct: 249 YHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQN------DAMESKVVQA 302 Query: 334 VFGDKTPISSLKSYMGHTLGACGALEAWLSIEMMHAN----WFAPTINLTRVDPECGQLD 389 +FG + P+SS K + GHTLGA A+EA L +M + P + DP L Sbjct: 303 LFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPALA 362 Query: 390 YIAGEGRRL--ECEYIMSNNFAFGGINTSLIFKR 421 + G+RL +++SN+FAFGG N +L+F R Sbjct: 363 PVQ-VGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,128,279 Number of extensions: 43114 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 3 Length of query: 423 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 335 Effective length of database: 1,203,190 Effective search space: 403068650 Effective search space used: 403068650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)