BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0004.p (245 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 416 e-118 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 171 5e-44 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 157 8e-40 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 142 4e-35 gi|300311869|ref|YP_003775961.1| short-chain alcohol dehydrogena... 105 2e-24 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 416 bits (1070), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/244 (81%), Positives = 221/244 (90%) Query: 1 MTNSGNNTILVTGSSRGIGKAIALRLARDGYDIVLHCHSRRDAADAVAKEIEALGRSARV 60 MT +G ++I VTGSSRGIG+AIALRLAR+GYDIVLHCH+RRDAAD VA EI ALGR RV Sbjct: 1 MTTTGAHSIFVTGSSRGIGRAIALRLAREGYDIVLHCHARRDAADQVAAEIAALGRQVRV 60 Query: 61 LQFDIGERAQTSGILLQDVEQHGAYYGVVCNAGIARDNAFPAMPGVDWDSVIKTNLDGFY 120 LQFD+ R Q + +LL DVEQHG YYGVVCNAGI RDNAFPAMPG DWDSV++TNLDGFY Sbjct: 61 LQFDVANREQAAQVLLADVEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFY 120 Query: 121 NVLYPLVMPMIQRRKPGRIVTLASVSGMVGNRGQVNYSAAKAGIIGATKALALELAKRNI 180 NVL PLVMPM++RR GRIVTLASVSG++GNRGQVNYSAAKAG+IGATKALALELAKR+I Sbjct: 121 NVLNPLVMPMVRRRAAGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDI 180 Query: 181 TVNCVAPGLIDTDMTDDLPMEDILKLIPARRAGKPEEVASAVSFLMQEDAAYITRQVISV 240 TVNCVAPGLIDTDMT+D P+++ILKLIPARRAGKPEEVA+AV+FLM DAAYITRQVISV Sbjct: 181 TVNCVAPGLIDTDMTEDAPIDEILKLIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISV 240 Query: 241 NGGL 244 NGGL Sbjct: 241 NGGL 244 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 171 bits (433), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 109/240 (45%), Positives = 148/240 (61%), Gaps = 8/240 (3%) Query: 10 LVTGSSRGIGKAIALRLARDGYDIVLHCHSRRDAADAVAKEIEALGRSA-RVLQFDIGER 68 LVTG+SRGIG+AIA LAR G ++ S AA A+ + + ALG A R ++ + Sbjct: 12 LVTGASRGIGRAIATELARQGAKVIGTATSESGAA-AITEYLAALGPEAGRGAVLNVND- 69 Query: 69 AQTSGILLQDVEQ-HGAYYGVVCNAGIARDNAFPAMPGVDWDSVIKTNLDGFYNVLYPLV 127 A+ S L++ V++ G+ +V NAGI +D M +WDSVI TNL + ++ Sbjct: 70 AEASVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVL 129 Query: 128 MPMIQRRKPGRIVTLASVSGMVGNRGQVNYSAAKAGIIGATKALALELAKRNITVNCVAP 187 M++ R GRI+ + SV G GN GQ+NY+AAKAG+ G ++ALA E+ RNITVNCVAP Sbjct: 130 RGMMKART-GRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAP 188 Query: 188 GLIDTDMTDDLPMED---ILKLIPARRAGKPEEVASAVSFLMQEDAAYITRQVISVNGGL 244 G IDTDMT L + IL+ IP R G EE+A AV+FL AAYIT ++VNGG+ Sbjct: 189 GFIDTDMTRALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGM 248 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 157 bits (397), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 127/237 (53%), Gaps = 4/237 (1%) Query: 11 VTGSSRGIGKAIALRLARDGYDIVLHCHSRRDAADAVAKEIEALGRSARVLQFDIGERAQ 70 VTG GIG AI RL +DGY +V C D + G + ++ Sbjct: 8 VTGGMGGIGTAICTRLCKDGYTVVAGCGPNSTRKDKWLATMREQGFDIHASEGNVSNWES 67 Query: 71 TSGILLQDVEQHGAYYGVVCNAGIARDNAFPAMPGVDWDSVIKTNLDGFYNVLYPLVMPM 130 T + + G +V NAGI RD F M DWD+VI TNL+ +NV ++ M Sbjct: 68 TKAAFEKVRAEIGEVDVLVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVTKQVIEGM 127 Query: 131 IQRRKPGRIVTLASVSGMVGNRGQVNYSAAKAGIIGATKALALELAKRNITVNCVAPGLI 190 +R GRI+ ++SV+G G GQ NYS AKAGI G T ALA E+A + +TVN V+PG I Sbjct: 128 CER-GFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGYI 186 Query: 191 DTDMTDDLP---MEDILKLIPARRAGKPEEVASAVSFLMQEDAAYITRQVISVNGGL 244 TDM + +E I+ IP +R G+PEE+AS V+++ + Y T S+NGGL Sbjct: 187 GTDMVRAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNGGL 243 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 134/247 (54%), Gaps = 6/247 (2%) Query: 3 NSGNNTILVTGSSRGIGKAIALRLARDGYDIVLHCHSRRDAADAVAKEIEALGRSARVLQ 62 +SG LVTG + GIG +I+ +LA G+ VL DAA A + A G A LQ Sbjct: 5 DSGARVALVTGGAMGIGASISQQLAAKGH-TVLVADINLDAASKTADALVAAGHRAAPLQ 63 Query: 63 FDIGERAQTSGILLQDVEQHGAYYGVVCNAGIARDNAFPAMPGVDWDSVIKTNLDGFYNV 122 D+G + + +G +V NAG+AR +F P +W + N+ G Sbjct: 64 MDLGSPESIAAAFAHIEKDYGRCDVLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLLA 123 Query: 123 LYPLVMPMIQRRKPGRIVTLASVSGMVGNRGQVNYSAAKAGIIGATKALALELAKRNITV 182 M+ +++ GRIV ++S+SG+ G+ Y +KA +IG T+ +A+ELA+ ITV Sbjct: 124 GQHAARLMV-KQQWGRIVNISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITV 182 Query: 183 NCVAPGLIDTDMTDDL----PMEDILKLIPARRAGKPEEVASAVSFLMQEDAAYITRQVI 238 N VAPG +DT MT + E +L+P RR G +E+ASAV +L E++AYIT VI Sbjct: 183 NSVAPGPVDTPMTQAMHSEQTRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVI 242 Query: 239 SVNGGLV 245 V+GG V Sbjct: 243 PVDGGFV 249 >gi|300311869|ref|YP_003775961.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 15/248 (6%) Query: 10 LVTGSSRGIGKAIALRLARDGYDIVLHCHSRRDAADAVAKEIEALGRSARVLQFDIGERA 69 L+TG SRG+GK AL LARDG ++L + AA+A E++ALG A L+ D+ + A Sbjct: 12 LITGGSRGLGKNTALHLARDGAGVILTYVGNQQAAEATVAELQALGAVAAALRLDLADSA 71 Query: 70 QTSGI------LLQDVEQHGAYYGVVCNAGIARDNAFPAMPGVDWDSVIKTNLDGFYNVL 123 L+ Q ++ +V N G+ + +D++ K +L G + L Sbjct: 72 SFPAFAQAVREALKTHWQAEHFHYLVNNGGMGMHASIEETSEAVFDALFKVHLKGPF-FL 130 Query: 124 YPLVMPMIQRRKPGRIVTLASVSGMVGNRGQVNYSAAKAGIIGATKALALELAKRNITVN 183 ++P++ + GRI+ ++S G Y++ K G+ T+ +A E R I VN Sbjct: 131 TQALLPLLA--QGGRIINISSGLARFSLPGYAAYASMKGGVEVMTRYMAKEFGARGIVVN 188 Query: 184 CVAPGLIDTDM-----TDDLPMEDILKLIPAR-RAGKPEEVASAVSFLMQEDAAYITRQV 237 VAPG I+TD D+ + + A RAG P+++ +A++ L++ D +I Q Sbjct: 189 TVAPGAIETDFGGGRVRDNAELNSFVAHQTALGRAGLPDDIGAAIASLLRPDNGWINAQR 248 Query: 238 ISVNGGLV 245 + V+GG+ Sbjct: 249 VEVSGGMF 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,670 Number of extensions: 28293 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 44 Length of query: 245 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,226,865 Effective search space: 198752130 Effective search space used: 198752130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)