BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0002.p (384 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 500 e-143 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 124 2e-29 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 112 7e-26 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 500 bits (1287), Expect = e-143, Method: Compositional matrix adjust. Identities = 267/373 (71%), Positives = 300/373 (80%), Gaps = 8/373 (2%) Query: 14 LRTSGRHAYEDA---PRIVGSIPFSDEELPTAAHLPLRERSRNNRVALAALAQIRPEVET 70 LR R Y DA P +G++P D LP HLPLRERSRNNR+ALAAL +IR +V+ Sbjct: 32 LRADAR--YLDAHGEPLALGAVP-DDTRLPEDDHLPLRERSRNNRLALAALQRIRVQVDA 88 Query: 71 LIARFGPDRIGVVLGTSTSGIAEGEAAFRHYVAHGKFPAQFHYGQQELGSPAAALAMTLG 130 IAR+G +RIG+VLGTSTSGIAEGEAAF A G FP +HYGQQELGSPA AL +TLG Sbjct: 89 AIARYGAERIGIVLGTSTSGIAEGEAAFAARAASGSFPPGYHYGQQELGSPATALQLTLG 148 Query: 131 LCGPAYVHSSACSSSAKAMASAARLINMGLCDAVISGGVDTLCDFTIAGFSSLDSVSAER 190 GPAYV SSAC+SS KA+ASAARL+NMGLCDAV+ GGVDTLC FTIAGF++L+SVSA+R Sbjct: 149 TTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESVSAQR 208 Query: 191 CNPLSINRRGINIGEGAALFLMTSEAAAATVALCGWGESSDAHHISAPDPEGVGAALAIR 250 CNPLS++R+GINIGEGAALFL+T E AA V L GWGESSDA+HISAPDPEG GA LAI Sbjct: 209 CNPLSLHRQGINIGEGAALFLLTREPAA--VQLSGWGESSDAYHISAPDPEGRGAQLAIG 266 Query: 251 QALLRAAIAPEQIDYINLHGTATLQNDAMESKAIHQLFGAKTPVSSTKSFTGHALGAASA 310 QAL RA + QIDYINLHGTAT QNDAMESK + LFG + PVSSTK FTGH LGAASA Sbjct: 267 QALRRAGLTASQIDYINLHGTATPQNDAMESKVVQALFGLEVPVSSTKPFTGHTLGAASA 326 Query: 311 IEAGLCWLTMQDDNPTGILPPHLWDGQADPALPVLHTVRVGESLGRPPRYVLSNSFAFGG 370 IEAGLCWL MQDDNP G+LPPHLWDG ADPALP L V+VG+ LGRP R+VLSNSFAFGG Sbjct: 327 IEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPALAPVQVGQRLGRPLRHVLSNSFAFGG 386 Query: 371 SNAALILGRGGNA 383 SN AL+ RG NA Sbjct: 387 SNVALVFSRGENA 399 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 133/267 (49%), Gaps = 19/267 (7%) Query: 125 LAMTLGLCGPAYVHSSACSSSAKAMASAARLINMGLCDAVISGGVDTLCDFTIAGFSSLD 184 + + G+ G SSAC+S ++ + A I G A+++GG + LC A F +L Sbjct: 153 MGVFFGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVFDTLY 212 Query: 185 SVSAERC------NPLSINRRGINIGEGA-ALFLMTSEAAAATVA-----LCGWGESSDA 232 + S +P +R G+ +GEGA +L L E A A A + G+G +SD Sbjct: 213 ATSVRNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDG 272 Query: 233 HHISAPDPEGVGAALAIRQALLRAAIAPEQIDYINLHGTATLQNDAMESKAIHQLFGAKT 292 H++ P+ + AA I+ AL A + I YIN HGT T Q D E++A ++FG T Sbjct: 273 AHVTNPNAATMQAA--IQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKAT 330 Query: 293 PVSSTKSFTGHALGAASAIEAGLCWLTMQDDNPTGILPPHLWDGQADPALPVLHTVRVGE 352 P+SS KS+ GH LGA A+EA L M+ G P + DP L + G Sbjct: 331 PISSLKSYMGHTLGACGALEAWLSIEMMRH----GWFAPTINLQHPDPDCGELDYL-TGN 385 Query: 353 SLGRPPRYVLSNSFAFGGSNAALILGR 379 YV+SN+FAFGG N +LI R Sbjct: 386 GRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 25/319 (7%) Query: 78 DRIGVVLGTSTSGIAEGEAAFRHYVAHG-KFPAQFHYGQQELGSPAAALAMTLGLCGPAY 136 +RIGV++G+ G+ E G + + F + + L++ GL GP Sbjct: 102 ERIGVMIGSGIGGLPLIEETHAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNL 161 Query: 137 VHSSACSSSAKAMASAARLINMGLCDAVISGGVDT-LCDFTIAGFSSLDSVSAERCNPLS 195 +AC++ + SAAR+I G D +++GG ++ + I GF+S ++S +P + Sbjct: 162 AIVTACTTGLHCIGSAARMIMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPAT 221 Query: 196 I------NRRGINIGEGAALFLM------TSEAAAATVALCGWGESSDAHHISAPDPEGV 243 +R G +GEGA + ++ + A L G+G S DA+H++AP+ +G Sbjct: 222 ASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDG- 280 Query: 244 GAALAIRQALLRAAIAPEQIDYINLHGTATLQNDAMESKAIHQLFG---AKTPVSSTKSF 300 + AL A + P+++ Y+N HGT+T D ES AI FG K V+STKS Sbjct: 281 -PRRCVLNALRDAGVNPDEVQYLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSM 339 Query: 301 TGHALGAASAIEAGLCWLTMQDDNPTGILPPHLWDGQADPALPVLHTVRVGESLGRPPRY 360 TGH LG A +E L L + + + PP + DP + + + Sbjct: 340 TGHLLGGAGGLETVLTVLAVHNQ----VSPPTMNIFNQDPECDLDYCANQARDM--KIDI 393 Query: 361 VLSNSFAFGGSNAALILGR 379 + NSF FGG+N L++G+ Sbjct: 394 AVKNSFGFGGTNGTLVIGK 412 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,254,566 Number of extensions: 53080 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 3 Length of query: 384 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 297 Effective length of database: 1,207,925 Effective search space: 358753725 Effective search space used: 358753725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)