BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0001.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313007|ref|YP_003777099.1| hypothetical protein Hsero_3713...   225   1e-60

>gi|300313007|ref|YP_003777099.1| hypothetical protein Hsero_3713
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  225 bits (573), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 126/152 (82%)

Query: 3   LQLSPASLGASLSLQQHLTVERAGRTDEIDTVLEIEPDRLDLVGLAFGQRVMSLHYDGKE 62
           L+L+PA+LG S+SLQQHL VER  R DE+DT LEI+ + LDLVGLAFGQRVMSLH+DG++
Sbjct: 37  LRLAPAALGQSISLQQHLKVERGSRIDELDTALEIDAEHLDLVGLAFGQRVMSLHFDGRQ 96

Query: 63  LKTWRHFMLPKEVQGEDVLQDVQLTLWPAAALRAALPPGWELEENDMQRTLLLHREVIAQ 122
           L+ WRH +LP +VQGEDVLQDVQLTLWPA A+R ALP GWEL E   QRTLLLH E IA 
Sbjct: 97  LQVWRHALLPSQVQGEDVLQDVQLTLWPAEAIRQALPEGWELREAQAQRTLLLHGEKIAV 156

Query: 123 IDYPDRKAWGGKVVLTNFRYLYKLTIQSVVTA 154
           IDYPD++ WGG V+L N RY YKLTIQSVVT+
Sbjct: 157 IDYPDQRRWGGTVILNNLRYHYKLTIQSVVTS 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 386,359
Number of extensions: 13155
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)