BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0218.p (499 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 399 e-112 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 385 e-108 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 363 e-101 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 361 e-100 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 348 5e-97 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 218/494 (44%), Positives = 316/494 (63%), Gaps = 6/494 (1%) Query: 5 VSFQHVCKDFGPVRVLHDISFDLVPGRVVGLLGENGAGKSTLMKILAGYEAISDGLLLID 64 ++ ++VCK F V L + F+L G V L+GENGAGKSTLMKIL+G G +L+D Sbjct: 23 IALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLD 82 Query: 65 GQPHQFSDSRAAEACGIVLIHQEFNLAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMRRD 124 G+P + ++ R A+A GI +IHQE NL HL+ AQN+F+G E R G +D+D + R Sbjct: 83 GKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPR--KAMGLFIDEDELNRQ 140 Query: 125 AAHYLQQVGLDLDPDTKVSQLIVAEKQLVEIARALSRQARLLIMDEPTAPLTSSETERLF 184 AA ++ LD+DP T V +L VA +Q+VEIA+ALS +R+LIMDEPTA L ++E LF Sbjct: 141 AAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELF 200 Query: 185 AVMAQLKAAGTTILYISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMVGRD 244 ++ L+A G I+YISHK+DE+ + D V VMRDG++I P + + + ++MVGR Sbjct: 201 RIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRA 260 Query: 245 LSDMFPARQAP-AAEAPVLLKVDNLCVPGWADGLSFEVRAGEILGFAGLVGAGRTESFEA 303 L R P + V+L+V L +SF +R GEILGFAGL+GAGRTE A Sbjct: 261 LDG--EQRIPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTEVARA 318 Query: 304 LFGLRARSAGAIFVHGKPVALRNPRDAMRHGMAYLSEDRKGKGLHVNLGLRENLTMSTID 363 +FG AG I +HG +++P DA+ HG+ YLSEDRK GL V + ++ N+ +S++ Sbjct: 319 IFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMG 378 Query: 364 RYAR-PWLDVNAEKQALVDAASAFNIRTRDLDSKARMLSGGNQQKLALAKYLHSDPQVVV 422 R+ R ++D A ++A I+T ++ +AR+LSGGNQQK+ +AK+L D ++ Sbjct: 379 RFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILF 438 Query: 423 LDEPTRGVDVGAKRDIYFLIHRLAAEGRAVIVISSELMELIGLCHRVAVMRNGRLQTTLG 482 DEPTRG+DVGAK +IY L+ LA +G+A+++ISSEL E++ + HRV VM GR+ L Sbjct: 439 FDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELA 498 Query: 483 IEHLTEEELIAHAT 496 T+E+++ AT Sbjct: 499 RADATQEKIMQLAT 512 Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 19/246 (7%) Query: 262 LLKVDNLC--VPG--WADGLSFEVRAGEILGFAGLVGAGRTESFEALFGLRARSAGAIFV 317 ++ + N+C PG D FE+ AGE+ G GAG++ + L G+ R +G I + Sbjct: 22 VIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 81 Query: 318 HGKPVALRNPRDAMRHGMAYLSEDRKGKGLHVNLGLRENLTMST---IDRYARPWLDVNA 374 GKPV + PR A G+ + H L L +L+ + I R R + + Sbjct: 82 DGKPVEITEPRQAQALGIGII---------HQELNLMNHLSAAQNIFIGREPRKAMGLFI 132 Query: 375 EKQALVDAASAFNIRTR-DLDSKARM--LSGGNQQKLALAKYLHSDPQVVVLDEPTRGVD 431 ++ L A+A R R D+D + L+ QQ + +AK L D +V+++DEPT ++ Sbjct: 133 DEDELNRQAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALN 192 Query: 432 VGAKRDIYFLIHRLAAEGRAVIVISSELMELIGLCHRVAVMRNGRLQTTLGIEHLTEEEL 491 +++ +I L A+G ++ IS ++ EL + RV+VMR+G+ T+ ++ + + + Sbjct: 193 NAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTI 252 Query: 492 IAHATG 497 I+ G Sbjct: 253 ISMMVG 258 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 6/231 (2%) Query: 18 RVLHDISFDLVPGRVVGLLGENGAGKSTLMKILAGYEAISDGLLLIDGQPHQFSDSRAAE 77 R + D+SF L G ++G G GAG++ + + + G + + G ++I G A Sbjct: 287 RAIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAV 346 Query: 78 ACGIVLIHQE---FNLAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMRRDAAHYLQQVGL 134 A GI + ++ F LA + + N+ L R + R +D A+R A Y++Q+ + Sbjct: 347 AHGIGYLSEDRKHFGLAVGMDVQANIALSSMGR--FTRVGFMDQRAIREAAQMYVRQLAI 404 Query: 135 DLDPDTKVSQLIVA-EKQLVEIARALSRQARLLIMDEPTAPLTSSETERLFAVMAQLKAA 193 + ++L+ +Q + IA+ L R +L DEPT + ++ ++ L Sbjct: 405 KTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQ 464 Query: 194 GTTILYISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMVGRD 244 G I+ IS +L EV R + V+VM +GR T++++ L R+ Sbjct: 465 GKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQEKIMQLATQRE 515 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/494 (44%), Positives = 310/494 (62%), Gaps = 8/494 (1%) Query: 10 VCKDFGPVRVLHDISFDLVPGRVVGLLGENGAGKSTLMKILAGYEAISDGLLLIDGQPHQ 69 + K FG L D+ + PG + L+GENGAGKSTLMK+L+G A G +L+DG+P Sbjct: 12 IRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVA 71 Query: 70 FSDSRAAEACGIVLIHQEFNLAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMRRDAAHYL 129 D A+ A GI LI+QE +A ++++A N+F+G E R R L+D AMR L Sbjct: 72 LRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRT---RLGLIDHAAMRSRTDAVL 128 Query: 130 QQVGLDLDPDTKVSQLIVAEKQLVEIARALSRQARLLIMDEPTAPLTSSETERLFAVMAQ 189 +Q+G +L +AE+Q VEIARAL ++R++IMDEPTA L+ ETE+LF V+ + Sbjct: 129 RQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRR 188 Query: 190 LKAAGTTILYISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMVGRDLSDMF 249 L+ G I+YISH++ EV D V V+RDG F+ + + +++ +MVGR LS+ + Sbjct: 189 LRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLSEFY 248 Query: 250 P-ARQAPA--AEAPVLLKVDNLCVPGWADGLSFEVRAGEILGFAGLVGAGRTESFEALFG 306 R APA A+ P +++V L G SF+VRAGE+LGFAGLVGAGRTE LFG Sbjct: 249 QHQRIAPADAAQLPTVMQVRALA-GGKIRPASFDVRAGEVLGFAGLVGAGRTELARLLFG 307 Query: 307 LRARSAGAIFVHGKPVALRNPRDAMRHGMAYLSEDRKGKGLHVNLGLRENLTMSTIDRYA 366 RS G I + G+PV + PR AMR G+AY+ EDRKG+GL + + + N TM+ R+ Sbjct: 308 ADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATMNVASRHT 367 Query: 367 RPWLDVNAEKQALVDAA-SAFNIRTRDLDSKARMLSGGNQQKLALAKYLHSDPQVVVLDE 425 R L + + AA N++ ++ LSGGNQQK+ LA++L P+V++LDE Sbjct: 368 RLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAPKVLILDE 427 Query: 426 PTRGVDVGAKRDIYFLIHRLAAEGRAVIVISSELMELIGLCHRVAVMRNGRLQTTLGIEH 485 PTRGVD+ AK +IY L+HRLA++G AV+VISSEL E+IG+C RV VMR G + L Sbjct: 428 PTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMITGELAGAA 487 Query: 486 LTEEELIAHATGTH 499 +T+E ++ AT T+ Sbjct: 488 ITQENIMRLATDTN 501 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 7/242 (2%) Query: 24 SFDLVPGRVVGLLGENGAGKSTLMKILAGYEAISDGLLLIDGQPHQFSDSRAAEACGIVL 83 SFD+ G V+G G GAG++ L ++L G + S G +L++G+P RAA GI Sbjct: 279 SFDVRAGEVLGFAGLVGAGRTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAY 338 Query: 84 IHQEFN---LAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMRRDAAHYLQQVGLDL-DPD 139 + ++ L + +A N + R R L+ ++ A +Q++ + + P+ Sbjct: 339 VPEDRKGQGLFLQMAVAANATMNVASR--HTRLGLVRSRSLGGVARAAIQRLNVKVAHPE 396 Query: 140 TKVSQLIVAEKQLVEIARALSRQARLLIMDEPTAPLTSSETERLFAVMAQLKAAGTTILY 199 T V +L +Q V +AR L ++LI+DEPT + ++ ++ +L + G ++ Sbjct: 397 TPVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVV 456 Query: 200 ISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMVGRDLSDMFPARQ-APAAE 258 IS +L EV D V+VMR+G +T++ + L ++ PA +P Sbjct: 457 ISSELPEVIGICDRVLVMREGMITGELAGAAITQENIMRLATDTNVPRTAPASHSSPTPL 516 Query: 259 AP 260 AP Sbjct: 517 AP 518 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/489 (41%), Positives = 297/489 (60%), Gaps = 7/489 (1%) Query: 12 KDFGPVRVLHDISFDLVPGRVVGLLGENGAGKSTLMKILAGYEAISDGLLLIDGQPHQFS 71 K+FGPV VL + ++ G V LLGENGAGKSTLMKIL G G + IDGQP +F Sbjct: 13 KNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDGQPCRFD 72 Query: 72 DSRAAEACGIVLIHQEFNLAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMRRDAAHYLQQ 131 RAA A G+ ++ QEF+L +L NMFL E R W GWL AMRR A + Q Sbjct: 73 SYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRW--GWL-QRAAMRRRAQEIIGQ 129 Query: 132 VGLDLDPDTKVSQLIVAEKQLVEIARALSRQARLLIMDEPTAPLTSSETERLFAVMAQLK 191 +G+ + D V +L VA++Q VEIA+AL+ AR+L++DEPTA LT +E E LFAVM L+ Sbjct: 130 LGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLR 189 Query: 192 AAGTTILYISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMVGRDLSDMFPA 251 A G I++ISH L+E+ D + V+RDG ++ T + + ++ +MVGR + + FP Sbjct: 190 AQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVGRRIENCFPP 249 Query: 252 RQAPA--AEAPVLLKVDNLCVPGWADGLSFEVRAGEILGFAGLVGAGRTESFEALFGLRA 309 + A E V+L+V L + A F++R GEILGFAGLVG+GRTE+ A+ G A Sbjct: 250 KPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLRRGEILGFAGLVGSGRTETVLAMLGAHA 309 Query: 310 RSAGAIFVHGKPVALRNPRDAMRHGMAYLSEDRKGKGLHVNLGLRENLTMSTIDRY--AR 367 + + +HG P+ +P A++ G+ L E RK +GL + + N++++ +Y Sbjct: 310 ALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFSILHNVSLNNYGKYRLGG 369 Query: 368 PWLDVNAEKQALVDAASAFNIRTRDLDSKARMLSGGNQQKLALAKYLHSDPQVVVLDEPT 427 +LD E+QA A ++ + LSGGNQQK+ +A++++ +V++ DEPT Sbjct: 370 LFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIARWINHAMKVLIFDEPT 429 Query: 428 RGVDVGAKRDIYFLIHRLAAEGRAVIVISSELMELIGLCHRVAVMRNGRLQTTLGIEHLT 487 RG+DVGAK +IY L+ A+G ++++ISSEL E++G+ RV V R G + TL E + Sbjct: 430 RGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGIVATLEGEAVN 489 Query: 488 EEELIAHAT 496 EE++ HAT Sbjct: 490 AEEIMTHAT 498 Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 4/222 (1%) Query: 276 GLSFEVRAGEILGFAGLVGAGRTESFEALFGLRARSAGAIFVHGKPVALRNPRDAMRHGM 335 G+ EVRAGE+ G GAG++ + L G+ AG I + G+P + R A+ G+ Sbjct: 23 GVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDGQPCRFDSYRAAIAGGV 82 Query: 336 AYLSEDRKGKGLHVNLGLRENLTMSTIDRYARPWLDVNAEKQALVDAASAFNIRTRDLDS 395 + ++ L L +N+ ++ R WL A ++ + + LD Sbjct: 83 GVVFQEFS---LIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQEIIGQLGVAI-PLDV 138 Query: 396 KARMLSGGNQQKLALAKYLHSDPQVVVLDEPTRGVDVGAKRDIYFLIHRLAAEGRAVIVI 455 LS QQ + +AK L D +++VLDEPT + ++ ++ L A+G A+I I Sbjct: 139 PVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLRAQGVAIIFI 198 Query: 456 SSELMELIGLCHRVAVMRNGRLQTTLGIEHLTEEELIAHATG 497 S L E+ +C R+ V+R+G T + + L+ G Sbjct: 199 SHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVG 240 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/503 (42%), Positives = 306/503 (60%), Gaps = 17/503 (3%) Query: 5 VSFQHVCKDFGPVRVLHDISFDLVPGRVVGLLGENGAGKSTLMKILAGY--EAISDGLLL 62 + + + K FG VR L+ I + PG VGL GENGAGKSTLMKIL+G +G +L Sbjct: 6 LEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEIL 65 Query: 63 IDGQPHQFSDSRAAEACGIVLIHQEFNLAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMR 122 DG+P Q R EA GIV+IHQE L L++A+N+F+GHE P G ++ AM Sbjct: 66 WDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHE--ITLP-GGRMNYPAMY 122 Query: 123 RDAAHYLQQVGL-DLDPDTKVSQLIVAEKQLVEIARALSRQARLLIMDEPTAPLTSSETE 181 R A ++++ + D++ VSQ +QLVEIA+AL++ ARLLI+DEP++ LT+SE Sbjct: 123 RRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIG 182 Query: 182 RLFAVMAQLKAAGTTILYISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMV 241 L ++ LKA G +YISHKLDEV D + V+RDG+ I P + + ++ MV Sbjct: 183 VLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQMV 242 Query: 242 GRDLSDMFPARQAPAAEAPVLLKVDNLCVPGW-------ADGLSFEVRAGEILGFAGLVG 294 GR+++ M+P R E V+L+ N+ D +SF VR GEILG AGLVG Sbjct: 243 GREITAMYPERNHAIGE--VVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG 300 Query: 295 AGRTESFEALFG-LRARSAGAIFVHGKPVALRNPRDAMRHGMAYLSEDRKGKGLHVNLGL 353 AGRTE A+FG R R G + + GKP +P ++R G+ + EDRK G+ +L + Sbjct: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVPDLDV 360 Query: 354 RENLTMSTIDRYAR-PWLDVNAEKQALVDAASAFNIRTRDLDSKARMLSGGNQQKLALAK 412 +N+T++ ++R++R +D +AE + + D ++T LSGGNQQK LAK Sbjct: 361 GQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVLAK 420 Query: 413 YLHSDPQVVVLDEPTRGVDVGAKRDIYFLIHRLAAEGRAVIVISSELMELIGLCHRVAVM 472 L + P+V++LDEPTRGVDVGAK +IY LI LA G A+I++SSEL E++G+ RV V+ Sbjct: 421 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVI 480 Query: 473 RNGRLQTTLGIEHLTEEELIAHA 495 GRL+ ++L++E ++A A Sbjct: 481 GEGRLRGDFVNDNLSQETVLAAA 503 Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 5/225 (2%) Query: 275 DGLSFEVRAGEILGFAGLVGAGRTESFEALFGLRARSA--GAIFVHGKPVALRNPRDAMR 332 +G+ ++R GE +G G GAG++ + L G+ G I GKP+ + RD Sbjct: 22 NGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEILWDGKPLQAHSVRDTEA 81 Query: 333 HGMAYLSEDRKGKGLHVNLGLRENLTMSTIDRYARPWLDVNAEKQALVDAASAFNIRTRD 392 G+ + ++ L L + EN+ M ++ A + + N+ + Sbjct: 82 AGIVIIHQELM---LVPELSVAENIFMGHEITLPGGRMNYPAMYRRAEELMRELNMPDIN 138 Query: 393 LDSKARMLSGGNQQKLALAKYLHSDPQVVVLDEPTRGVDVGAKRDIYFLIHRLAAEGRAV 452 + GG+QQ + +AK L+ D ++++LDEP+ + + +I L A G A Sbjct: 139 VALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVLLKIIKDLKARGVAC 198 Query: 453 IVISSELMELIGLCHRVAVMRNGRLQTTLGIEHLTEEELIAHATG 497 + IS +L E+ +C ++V+R+G+ T ++ + +++I G Sbjct: 199 VYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQMVG 243 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 348 bits (894), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 197/487 (40%), Positives = 295/487 (60%), Gaps = 20/487 (4%) Query: 5 VSFQHVCKDFGPVRVLHDISFDLVPGRVVGLLGENGAGKSTLMKILAGYEAISDGLLLID 64 +S + K F V L D+ F + PG V+ LLGENGAGKSTL+KIL G +G + + Sbjct: 36 LSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLG 95 Query: 65 GQPHQFSDSRAAEACGIVLIHQEFNLAEHLTIAQNMFLGHEKRCDWPRGWLLDDDAMRRD 124 G+ +F+ ++ A GI +HQE + E L++A+N+++G + C PR +D M + Sbjct: 96 GREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPR--RIDWRRMEDE 153 Query: 125 AAHYLQQVGLDLDPDTKVSQLIVAEKQLVEIARALSRQARLLIMDEPTAPLTSSETERLF 184 A ++ +DL +V L VA++ VEIARALS+QA+++IMDEPTA L+ E L+ Sbjct: 154 ARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELY 213 Query: 185 AVMAQLKAAGTTILYISHKLDEVERNTDEVIVMRDGRFITREPTEGLTRQQMANLMVGRD 244 ++ QL+ AGT +++ISHK DE+ D V+RDGRFI +T QQ+ LMVGR+ Sbjct: 214 RIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVGRE 273 Query: 245 LSDMFPARQAPAAE---APVLLKVDNLCVPGWADGLSFEVRAGEILGFAGLVGAGRTESF 301 + +F +R A E APV L+V +L P D +SF VR GEILGF GLVGAGR+E Sbjct: 274 VGQVF-SRAASNTEDQTAPV-LEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAGRSEVM 331 Query: 302 EALFGLRARSAGAIFVHGKPVALRNPRDAMRHGMAYLSEDRKGKGLHVNLGLRENLTMST 361 ALFGL + GA+++ G+ V L +P A+ HG+AY+ EDR+ +G ++L + +N+T+ Sbjct: 332 HALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQNITLPV 391 Query: 362 ID-------RYARPWLDVNAEKQALVDAASAFNIRTRDLDSKARMLSGGNQQKLALAKYL 414 + R+ R +D+ ++ LSGGNQQK+ LAK+L Sbjct: 392 LPGIGFFLRRHRRREIDIARR------LCEQLELKASHFHQHVAQLSGGNQQKVVLAKWL 445 Query: 415 HSDPQVVVLDEPTRGVDVGAKRDIYFLIHRLAAEGRAVIVISSELMELIGLCHRVAVMRN 474 + P+V++LDEPT+G+D+G+K ++ I L A+G AVI++SSEL E++G+ R+ VM Sbjct: 446 ATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQ 505 Query: 475 GRLQTTL 481 GR+Q Sbjct: 506 GRVQQVF 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,531,170 Number of extensions: 65970 Number of successful extensions: 922 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 608 Number of HSP's successfully gapped: 206 Length of query: 499 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 410 Effective length of database: 1,198,455 Effective search space: 491366550 Effective search space used: 491366550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)