BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0213.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase [Herbas...    61   9e-11

>gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score = 60.8 bits (146), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 12/88 (13%)

Query: 80  DIAREQDKLRWADTVILQFPLWWYAMPAIMKGWVERVYAYGFAYGVGEHSDTHWGDRFGE 139
           D+  EQ  L   + +++Q P+ WY+MPA+ K W++ V   G+A+G G H+          
Sbjct: 47  DVEHEQQLLGTVELIVMQHPIHWYSMPALQKQWLDSVLTRGWAFGHGGHA---------- 96

Query: 140 GTLSGKRAMVIVTTGGWESHYTARGING 167
             L GKR  ++ TTGG E+ Y  +G +G
Sbjct: 97  --LHGKRFWLVATTGGEEAAYRPQGRHG 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 935,940
Number of extensions: 42585
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)