BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0211.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase [Herb...   261   4e-71
gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase [Herb...    68   7e-13

>gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  261 bits (667), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 148/181 (81%)

Query: 7   VLAPPAQTTPASPWPLTVATYNIHSAIGTDGRFDPERIARVLLDIGADVIALQEVPLGGS 66
           VL+  A      PWPLTVATYNIH A+GTDGRF PER+A VL ++ ADV+ALQEVPLGG+
Sbjct: 21  VLSADAPVPGRDPWPLTVATYNIHGAVGTDGRFAPERVAAVLDELQADVVALQEVPLGGA 80

Query: 67  ESADVLKVLQEATGFHAVEGPTEDTPQRRYGNAVLSRYPVQATRAIDLSFGSREARGALD 126
           +  DVL +L+  TG  A EGPT ++P RRYGNAVLSRYP+ AT +IDLSFGSRE RGALD
Sbjct: 81  DQVDVLALLRAHTGMFAAEGPTMESPARRYGNAVLSRYPILATESIDLSFGSREPRGALD 140

Query: 127 ADLACHGQPLRVVATHLGLRPAERRDQIKRLLQAFDTDRMPVILMGDVNEWFVWGRPLRW 186
           AD+ C GQ LRVVATHLGL+PAERR QIKRLLQAFDT+  PVIL+GDVNEWF+WGR LRW
Sbjct: 141 ADIDCRGQLLRVVATHLGLKPAERRAQIKRLLQAFDTNDAPVILLGDVNEWFMWGRTLRW 200

Query: 187 L 187
           L
Sbjct: 201 L 201


>gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 23/174 (13%)

Query: 22  LTVATYNIHSAIGT-DGRFDPERIARVLLDIGADVIALQEVPLGGSESADVLKVLQEATG 80
           L VATYNIH  + +  GR     + + L  +  D++ LQEV     +    L  L+ A+ 
Sbjct: 3   LRVATYNIHKGVTSFAGRPRILALKQALAQLDPDILFLQEV-----QGRHDLNALRHASN 57

Query: 81  --------------FHAVEGPTEDTPQRRYGNAVLSRYPVQATRAIDLSFGSREARGALD 126
                          HA  G         +GNA++SR+ + + R  D+S  + E+RG L 
Sbjct: 58  WPQQGQHEYLAGDTHHAAYGMNAVYDHGHHGNALISRFEIASIRNQDVSDHAYESRGILH 117

Query: 127 ADLACHGQPLRVVATHLGLRPAERRDQIKRLLQAFDTDR---MPVILMGDVNEW 177
             +   G  +     HLGL    RR QI  L+QA  T      P+++ GD N+W
Sbjct: 118 CVVPVEGVEVHCYVIHLGLFAGGRRRQIDALIQAVSTSSPPDAPLLIAGDFNDW 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 882,599
Number of extensions: 40352
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)