BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0206.p (133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 238 9e-65 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 221 1e-59 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 204 3e-54 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 157 3e-40 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 80 6e-17 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 238 bits (608), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 112/131 (85%), Positives = 126/131 (96%) Query: 2 ADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWNM 61 ADDQYFLVVDDFSTMRRIV+GLLKELE+TK+ EA+DG++A+K+LE GA P+TFVLTDWNM Sbjct: 3 ADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDWNM 62 Query: 62 PVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDKI 121 PVMDGL LLKKIRATPS+AHLPVLMITAEAKKENIVEAAQ+GADGYIVKPFNAATLKDKI Sbjct: 63 PVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKDKI 122 Query: 122 EKIIHRRANMA 132 EKI+ RRA++A Sbjct: 123 EKILARRAHLA 133 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 221 bits (564), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 104/130 (80%), Positives = 121/130 (93%) Query: 2 ADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWNM 61 A +Q+FLVVDDFSTMRRIV+GLLKELE+TK+ EA+DG++A+K+LE GA+ ITFVLTDWNM Sbjct: 3 ATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNM 62 Query: 62 PVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDKI 121 PVMDGL LLKKIR+TP+L+HLPVLMITAEAKKENIV AAQ GADGYIVKPFNA TLK+KI Sbjct: 63 PVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKI 122 Query: 122 EKIIHRRANM 131 EKI+ RRA+M Sbjct: 123 EKILARRAHM 132 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 204 bits (518), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 95/132 (71%), Positives = 112/132 (84%) Query: 1 MADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWN 60 M+ DQ+FLVVDDFSTMRRI+ GLLKELE+ K+ +A+DG +A K+LE GA PI+FV+TDWN Sbjct: 1 MSTDQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWN 60 Query: 61 MPVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDK 120 MP MDGL LLKKIR TP L LPVLM++AEAKKENIV AA+ GADGYIVKPFNAATL DK Sbjct: 61 MPGMDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDK 120 Query: 121 IEKIIHRRANMA 132 I KI+ RR++M Sbjct: 121 ISKILQRRSSMG 132 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 157 bits (396), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/123 (63%), Positives = 96/123 (78%), Gaps = 2/123 (1%) Query: 7 FLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWNMPVMDG 66 FLVVDDFSTMRRIV LLKEL +T + EAEDG A++ L + FV++DWNMP MDG Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLR--SDQFDFVVSDWNMPNMDG 65 Query: 67 LALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDKIEKIIH 126 L +L++IR P+L+ LPVLM+TAEAKKENIV AAQAGA+GY+VKPF AATL +K+ KI Sbjct: 66 LTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFE 125 Query: 127 RRA 129 + A Sbjct: 126 KMA 128 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 80.1 bits (196), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 7 FLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWNMPVMDG 66 L VDD ++R++V LK + + EA DG A++ + + VLTD NMP MDG Sbjct: 5 ILAVDDSGSLRQMVVFSLKAAGYN-VTEAVDGVDALE--KAKSQTFDLVLTDQNMPRMDG 61 Query: 67 LALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDKIEKII 125 L L++ +R S A +P+LM+T E E + AGA+G++VKPF+ L + + K+I Sbjct: 62 LTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 384,929 Number of extensions: 14265 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 26 Length of query: 133 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 58 Effective length of database: 1,264,745 Effective search space: 73355210 Effective search space used: 73355210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)