BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0202.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311289|ref|YP_003775381.1| lipoprotein protein [Herbaspiri...   229   9e-62

>gi|300311289|ref|YP_003775381.1| lipoprotein protein
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  229 bits (585), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/182 (63%), Positives = 141/182 (77%), Gaps = 3/182 (1%)

Query: 7   LPFAFTVLPLVALVLLAGCSTSKQSFYHQEDFSETDTYSRSFGSSDAAVCEAARRALLGQ 66
           LP +      ++L L A C T K +FYHQE+FS+T  +SRSF  S+ AVCEAARRALLGQ
Sbjct: 6   LPVSLCFAATLSLTL-AACGT-KAAFYHQEEFSDTSAFSRSFPGSEKAVCEAARRALLGQ 63

Query: 67  GYIISKAQANIVDGTKSFQPEADQHVEIAFHIVCAGNGKADQNASLFVSATQDRYALKKT 126
           GYII+KA  N +DG KSFQP +D+H+EIAFH+VCA NG   +++++FVSATQD Y +KK+
Sbjct: 64  GYIITKATDNTMDGNKSFQPASDKHMEIAFHVVCASNGNG-KSSTMFVSATQDGYGIKKS 122

Query: 127 NNSASLGVGVLGSVSMPFGSSDDSLVRVASETIRSAHFYDRFFGAVERYLAPGEDDAAKA 186
           N+SASLGV VLGSVSMPF +SDDS+VRV+SETIRS+ FYDRFFGA ERYL    DD    
Sbjct: 123 NSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRSSDFYDRFFGAAERYLLVDVDDDTAP 182

Query: 187 GK 188
           GK
Sbjct: 183 GK 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,629
Number of extensions: 21123
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)