BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0193.p (496 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 356 3e-99 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 351 8e-98 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 338 7e-94 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 336 3e-93 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 327 2e-90 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 356 bits (913), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 197/485 (40%), Positives = 293/485 (60%), Gaps = 19/485 (3%) Query: 3 ALLLEANGVKKSFQGIPALTDGRLALRPGSVHALCGGNGAGKSTFLNILMGVLRRDDGEI 62 A +L +G+ K FQG+ AL D +RPG V AL G NGAGKST + IL G+ + D+G I Sbjct: 33 APVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSI 92 Query: 63 FLHGRQVDFATPAEALESRVAMITQELSPIPGMTVAENIYLGREPRTAGIC-----VDFK 117 L GR+V FA+ +A+ + + QE ++VAENI++GR+P +C +D++ Sbjct: 93 HLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQP----LCGTPRRIDWR 148 Query: 118 TMLRQAQALLERLQFPVNPRLRMSSLSLAQVQLVEIAKAFSRDCDVMIMDEPTSVCXYY- 176 M +A+AL RL+ + R R+ LS+AQ VEIA+A S+ V+IMDEPT+ ++ Sbjct: 149 RMEDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHE 208 Query: 177 IGERETEVLFNAIRSLTAQGTGIVYVSHRLSEIFQIADDYTVFRDGRFVENGRIADIDRA 236 IGE L+ I L GT ++++SH+ EI+ +AD YTV RDGRF+ +G +ADI Sbjct: 209 IGE-----LYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQ 263 Query: 237 ALVTAIVGRK----LQTATRSRRDAGKAVLETEGLSRNGEFNEISLRVHAGEVLGIYGLM 292 LV +VGR+ A + D VLE + LS EF+++S V GE+LG YGL+ Sbjct: 264 QLVALMVGREVGQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLV 323 Query: 293 GAGRSEYLNCIYGLTRPDNGGIFLRGVPLPVGNPGRSIASGISLVTEDRKETGLVLTASI 352 GAGRSE ++ ++GL+ G +++ G + + +P ++IA G++ V EDR+ G +L+ I Sbjct: 324 GAGRSEVMHALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPI 383 Query: 353 RDNIALSAYRRLSRLAMIDRQRVNRLAGDMVKRIRMKTSSVNLPVSSMSGGNQQKVVLAR 412 NI L + R+R +A + +++ +K S + V+ +SGGNQQKVVLA+ Sbjct: 384 FQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAK 443 Query: 413 CLSTEPVCLMCDEPTRGIDEGAKREVYQLINEFAENGGAVLLVSSEAQEVLDVSDRIAVF 472 L+T+P L+ DEPT+GID G+K V++ I E G AV+LVSSE EV+ +SDRI V Sbjct: 444 WLATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVM 503 Query: 473 KAGSV 477 G V Sbjct: 504 HQGRV 508 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 351 bits (901), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 195/489 (39%), Positives = 294/489 (60%), Gaps = 7/489 (1%) Query: 11 VKKSFQGIPALTDGRLALRPGSVHALCGGNGAGKSTFLNILMGVLRRDDGEIFLHGRQVD 70 V K F G+ AL + + L G VHAL G NGAGKST + IL GV +RD G+I L G+ V+ Sbjct: 28 VCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVE 87 Query: 71 FATPAEALESRVAMITQELSPIPGMTVAENIYLGREPRTA-GICVDFKTMLRQAQALLER 129 P +A + +I QEL+ + ++ A+NI++GREPR A G+ +D + RQA A+ R Sbjct: 88 ITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFAR 147 Query: 130 LQFPVNPRLRMSSLSLAQVQLVEIAKAFSRDCDVMIMDEPTSVCXYYIGERETEVLFNAI 189 ++ ++P + L++A+ Q+VEIAKA S D V+IMDEPT+ + E LF I Sbjct: 148 MRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAA----LNNAEIAELFRII 203 Query: 190 RSLTAQGTGIVYVSHRLSEIFQIADDYTVFRDGRFVENGRIADIDRAALVTAIVGRKLQT 249 R L AQG GIVY+SH++ E+ QIAD +V RDG+++ + + +++ +VGR L Sbjct: 204 RDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRALDG 263 Query: 250 ATRSRRDAGK--AVLETEGLSRNGEFNEISLRVHAGEVLGIYGLMGAGRSEYLNCIYGLT 307 R D + VLE GL+R ++S + GE+LG GLMGAGR+E I+G Sbjct: 264 EQRIPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGAD 323 Query: 308 RPDNGGIFLRGVPLPVGNPGRSIASGISLVTEDRKETGLVLTASIRDNIALSAYRRLSRL 367 + G I + G + +P ++A GI ++EDRK GL + ++ NIALS+ R +R+ Sbjct: 324 PLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRV 383 Query: 368 AMIDRQRVNRLAGDMVKRIRMKTSSVNLPVSSMSGGNQQKVVLARCLSTEPVCLMCDEPT 427 +D++ + A V+++ +KT SV +SGGNQQK+V+A+ L + L DEPT Sbjct: 384 GFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPT 443 Query: 428 RGIDEGAKREVYQLINEFAENGGAVLLVSSEAQEVLDVSDRIAVFKAGSVVAMLDGHTST 487 RGID GAK E+Y+L++ AE G A++++SSE EVL +S R+ V G + L +T Sbjct: 444 RGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADAT 503 Query: 488 QEELLHLAS 496 QE+++ LA+ Sbjct: 504 QEKIMQLAT 512 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 338 bits (866), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 195/498 (39%), Positives = 286/498 (57%), Gaps = 11/498 (2%) Query: 5 LLEANGVKKSFQGIPALTDGRLALRPGSVHALCGGNGAGKSTFLNILMGVLRRDDGEIFL 64 LL+ G++KSF AL+D L +RPG +HAL G NGAGKST + +L GV D GEI L Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILL 65 Query: 65 HGRQVDFATPAEALESRVAMITQELSPIPGMTVAENIYLGREPRTAGICVDFKTMLRQAQ 124 GR V P + + + +I QEL+ P ++VA N+++G E RT +D M + Sbjct: 66 DGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTD 125 Query: 125 ALLERLQFPVNPRLRMSSLSLAQVQLVEIAKAFSRDCDVMIMDEPTSVCXYYIGERETEV 184 A+L +L LS+A+ Q VEIA+A ++IMDEPT+ + ERETE Sbjct: 126 AVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAA----LSERETEQ 181 Query: 185 LFNAIRSLTAQGTGIVYVSHRLSEIFQIADDYTVFRDGRFVENGRIADIDRAALVTAIVG 244 LFN +R L +G I+Y+SHR++E++ +AD TV RDG FV +ID +V +VG Sbjct: 182 LFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVG 241 Query: 245 RKLQTATRSRR----DAGK--AVLETEGLSRNGEFNEISLRVHAGEVLGIYGLMGAGRSE 298 R L + +R DA + V++ L+ G+ S V AGEVLG GL+GAGR+E Sbjct: 242 RSLSEFYQHQRIAPADAAQLPTVMQVRALA-GGKIRPASFDVRAGEVLGFAGLVGAGRTE 300 Query: 299 YLNCIYGLTRPDNGGIFLRGVPLPVGNPGRSIASGISLVTEDRKETGLVLTASIRDNIAL 358 ++G G I L G P+ + P ++ +GI+ V EDRK GL L ++ N + Sbjct: 301 LARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATM 360 Query: 359 SAYRRLSRLAMIDRQRVNRLAGDMVKRIRMKTSSVNLPVSSMSGGNQQKVVLARCLSTEP 418 + R +RL ++ + + +A ++R+ +K + PV +SGGNQQKV+LAR L P Sbjct: 361 NVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAP 420 Query: 419 VCLMCDEPTRGIDEGAKREVYQLINEFAENGGAVLLVSSEAQEVLDVSDRIAVFKAGSVV 478 L+ DEPTRG+D AK E+YQL++ A G AV+++SSE EV+ + DR+ V + G + Sbjct: 421 KVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMIT 480 Query: 479 AMLDGHTSTQEELLHLAS 496 L G TQE ++ LA+ Sbjct: 481 GELAGAAITQENIMRLAT 498 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 336 bits (861), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 195/505 (38%), Positives = 298/505 (59%), Gaps = 16/505 (3%) Query: 1 MAALLLEANGVKKSFQGIPALTDGRLALRPGSVHALCGGNGAGKSTFLNILMGVLRRDDG 60 M A +L+ G+KK+F + L L +R G VHAL G NGAGKST + IL G++R D G Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 EIFLHGRQVDFATPAEALESRVAMITQELSPIPGMTVAENIYLGREPRTAGICVDFKTML 120 EI + G+ F + A+ V ++ QE S IP + +N++L RE R+ + M Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMR 120 Query: 121 RQAQALLERLQFPVNPRLRMSSLSLAQVQLVEIAKAFSRDCDVMIMDEPTSVCXYYIGER 180 R+AQ ++ +L + + + LS+AQ Q VEIAKA + D ++++DEPT+ + Sbjct: 121 RRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTAT----LTPA 176 Query: 181 ETEVLFNAIRSLTAQGTGIVYVSHRLSEIFQIADDYTVFRDGRFVENGRIADIDRAALVT 240 E E LF +RSL AQG I+++SH L EIF+I D TV RDG +V A++D+A LV Sbjct: 177 EVEHLFAVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVE 236 Query: 241 AIVGRKLQTA-----TRSRRDAGKAVLETEGLS--RNGEFNEISLRVHAGEVLGIYGLMG 293 +VGR+++ + G+ VLE L R ++ LR GE+LG GL+G Sbjct: 237 MMVGRRIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLR--RGEILGFAGLVG 294 Query: 294 AGRSEYLNCIYGLTRPDNGGIFLRGVPLPVGNPGRSIASGISLVTEDRKETGLVLTASIR 353 +GR+E + + G + + + GVPL +P +++ +GI L+ E RKE GL+ + SI Sbjct: 295 SGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFSIL 354 Query: 354 DNIALSAY--RRLSRLAMIDRQRVNRLAGDMVKRIRMKTSSVNLPVSSMSGGNQQKVVLA 411 N++L+ Y RL L +DR+R + ++R+R+K + V ++SGGNQQKVV+A Sbjct: 355 HNVSLNNYGKYRLGGL-FLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIA 413 Query: 412 RCLSTEPVCLMCDEPTRGIDEGAKREVYQLINEFAENGGAVLLVSSEAQEVLDVSDRIAV 471 R ++ L+ DEPTRGID GAK E+YQL+ EF G ++L++SSE EV+ ++DR+ V Sbjct: 414 RWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCV 473 Query: 472 FKAGSVVAMLDGHTSTQEELLHLAS 496 F+ G +VA L+G EE++ A+ Sbjct: 474 FRGGGIVATLEGEAVNAEEIMTHAT 498 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 194/507 (38%), Positives = 291/507 (57%), Gaps = 16/507 (3%) Query: 1 MAALLLEANGVKKSFQGIPALTDGRLALRPGSVHALCGGNGAGKSTFLNILMGVLRRD-- 58 M+ LLE G+ KSF G+ AL + +RPG LCG NGAGKST + IL GV Sbjct: 1 MSEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 Query: 59 DGEIFLHGRQVDFATPAEALESRVAMITQELSPIPGMTVAENIYLGREPRTAGICVDFKT 118 +GEI G+ + + + + + +I QEL +P ++VAENI++G E G +++ Sbjct: 61 EGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPA 120 Query: 119 MLRQAQALLERLQFP-VNPRLRMSSLSLAQVQLVEIAKAFSRDCDVMIMDEPTSVCXYYI 177 M R+A+ L+ L P +N L +S QLVEIAKA ++D ++I+DEP+S + Sbjct: 121 MYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSS----SL 176 Query: 178 GERETEVLFNAIRSLTAQGTGIVYVSHRLSEIFQIADDYTVFRDGRFVENGRIADIDRAA 237 E VL I+ L A+G VY+SH+L E+ ++ D +V RDG+ + + ++D Sbjct: 177 TASEIGVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDK 236 Query: 238 LVTAIVGRKLQTATRSRRDA-GKAVLETEGLS-------RNGEFNEISLRVHAGEVLGIY 289 ++T +VGR++ R A G+ VLE ++ R +++S V GE+LGI Sbjct: 237 IITQMVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIA 296 Query: 290 GLMGAGRSEYLNCIYGLTRPD-NGGIFLRGVPLPVGNPGRSIASGISLVTEDRKETGLVL 348 GL+GAGR+E ++ I+G R G + L G P +P +SI G+ +V EDRK G+V Sbjct: 297 GLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVP 356 Query: 349 TASIRDNIALSAYRRLSRLAMIDRQRVNRLAGDMVKRIRMKTSSVNLPVSSMSGGNQQKV 408 + NI L+ R SR + ID + D + R+R+KT++ LP++S+SGGNQQK Sbjct: 357 DLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKA 416 Query: 409 VLARCLSTEPVCLMCDEPTRGIDEGAKREVYQLINEFAENGGAVLLVSSEAQEVLDVSDR 468 VLA+ L +P L+ DEPTRG+D GAK E+Y+LI+E A+ G A+++VSSE EVL VSDR Sbjct: 417 VLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDR 476 Query: 469 IAVFKAGSVVAMLDGHTSTQEELLHLA 495 + V G + +QE +L A Sbjct: 477 VLVIGEGRLRGDFVNDNLSQETVLAAA 503 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,448,613 Number of extensions: 61323 Number of successful extensions: 795 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 543 Number of HSP's successfully gapped: 197 Length of query: 496 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 407 Effective length of database: 1,198,455 Effective search space: 487771185 Effective search space used: 487771185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)