BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0191.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309780|ref|YP_003773872.1| transcription regulator [Herbas...   101   7e-23
gi|300312385|ref|YP_003776477.1| SorC family transcription regul...    94   1e-20

>gi|300309780|ref|YP_003773872.1| transcription regulator
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  101 bits (252), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 11/313 (3%)

Query: 4   DELTRLATLYYVDGLTQDELSKRFSISRPTIGRMLKRAQREGIVEIRVRHHPGDTSQLEH 63
           D   R A +YYV G TQ+E+++R  ISR    RM+  A    +V++++ H      +L  
Sbjct: 9   DLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPVSSCLELAQ 68

Query: 64  ALMARFGIERAII------SINHKDQESQRELLAGLVASHLDRILAND--MIVAVGMGRN 115
            L  R+G++   +      + N  + +  +++LA   A  +++ L ++  ++V VG GR 
Sbjct: 69  GLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLVVNVGSGRT 128

Query: 116 TSAVSKHAVSSMQRNLTFVCAIGGSYRGGETMNSDHICRRLAARFGGESETLYAPALVSD 175
             A  +  +S ++R    + ++ G++    + N   +  + A + G     L AP +   
Sbjct: 129 LKAAIER-LSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLPAPRVAES 187

Query: 176 PQVRGSLLANDTVKQTLDKAQRAHIALIGIGDINEDSNMVRMGWFSPQEILEVKHMGAVG 235
              R     +   K     A+RA +  +GIG I     M   G+    E+ E++  GAVG
Sbjct: 188 ESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAELQRQGAVG 247

Query: 236 DMMGYDFINMNGEPAQTSLQARVIGLTLDDLRRIPNVIAVASENSKTTAVLGALRTGVIN 295
           +M+ + F +++G    +SL ARV    L    + P VIA    + K  AV  ALR G + 
Sbjct: 248 EMICHAF-DIDGVMLPSSLSARVTTPPLTQRPQRP-VIAFCGGSKKAEAVRAALRGGWLT 305

Query: 296 TLATTETIAQSIL 308
            L T E  A+  L
Sbjct: 306 GLVTDEVCARHAL 318


>gi|300312385|ref|YP_003776477.1| SorC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 134/304 (44%), Gaps = 10/304 (3%)

Query: 8   RLATLYYVDGLTQDELSKRFSISRPTIGRMLKRAQREGIVEIRVRHHPGDTS-QLEHALM 66
           R+A LYY   +T   ++     SR T+ R+L  A   G+VEIRV H P   S  LE A+ 
Sbjct: 15  RVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRV-HDPQQVSGSLEAAIA 73

Query: 67  ARF---GIERAIISINHKDQESQRELLAGLVASHLDRILANDMIVAVGMGRNTSAVSKHA 123
             +    I+   ++    D+E+ + +     A++++ ++    I+ +  G   + ++   
Sbjct: 74  NHYRLHSIQVVPVAAAATDKETLQRVTCH-AAAYVNSLVTPGTIIGLAWGTTVAQIADQL 132

Query: 124 VSSMQRNLTFVCAIGGSYRGGETMNS--DHICRRLAARFGGESETLYAPALVSDPQVRGS 181
           +     ++  V A+ GS  G   +NS  + I  R A  +G  +  L  PA    P+ R +
Sbjct: 133 LPRHVHDVD-VVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRTA 191

Query: 182 LLANDTVKQTLDKAQRAHIALIGIGDINEDSNMVRMGWFSPQEILEVKHMGAVGDMMGYD 241
           L    ++K   D  +RA I L  IG     S +   G+   +E   ++  G VGD+    
Sbjct: 192 LWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDEGLVGDIATV- 250

Query: 242 FINMNGEPAQTSLQARVIGLTLDDLRRIPNVIAVASENSKTTAVLGALRTGVINTLATTE 301
           F   +G     +  AR  G  +D   R  + + V S   K   +  ALR G IN L   E
Sbjct: 251 FFRADGSWRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRGGFINELIIDE 310

Query: 302 TIAQ 305
             A+
Sbjct: 311 PSAR 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,243
Number of extensions: 38699
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)