BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0190.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   523   e-150
gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   404   e-114

>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  523 bits (1348), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/289 (87%), Positives = 273/289 (94%)

Query: 1   MKRVILFLVTNLAVMLVLSVTASILGINRYMTANGLNFGMLLMFCALMGFGGSFISLLLS 60
           MKRVILFLVTNLAVMLVLSVTAS+LG+NRY+TANGLNFGMLL+FC LMGFGGSFISL +S
Sbjct: 1   MKRVILFLVTNLAVMLVLSVTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60

Query: 61  KTIAKWSTGARVLEHPQNSTEVWLVDTVNRLATRAGLTMPEVAVYDGPPNAFATGASKSN 120
           KTIAKWSTGARV+E PQNSTE+WL+ TV  LA RA L MPEVAVYDGPPNAFATGASKSN
Sbjct: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQNLAARAQLPMPEVAVYDGPPNAFATGASKSN 120

Query: 121 SLVAVSTGLLQGMTREEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           SLVAVSTGLLQGMT++EVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD
Sbjct: 121 SLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180

Query: 181 SALRRNNEQSSGPGIGYMVTVVVCEIVFGILASIIVMYFSRQREYRADAGAAKLMGSPTP 240
           S LRRNNE++SGPGIGYMVTV VCEI+FGILASIIVMYFSRQREYRADAGAA LMGS  P
Sbjct: 181 SFLRRNNEENSGPGIGYMVTVFVCEIIFGILASIIVMYFSRQREYRADAGAASLMGSNAP 240

Query: 241 MIGALRRLGGMEADGLPQNLQASGIAGRGSWMGLFSSHPTIESRIASLQ 289
           MI ALRRLGGM++DGLPQNLQA+GI+GR SWMGLFSSHP++ESRIA+LQ
Sbjct: 241 MINALRRLGGMQSDGLPQNLQAAGISGRESWMGLFSSHPSLESRIAALQ 289


>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  404 bits (1037), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/289 (67%), Positives = 245/289 (84%), Gaps = 1/289 (0%)

Query: 1   MKRVILFLVTNLAVMLVLSVTASILGINRYMTANGLNFGMLLMFCALMGFGGSFISLLLS 60
           MKR++LF+ TN+AV++V+SV  S+LG++R++T +GLN  MLL+F  ++GF GS ISLL+S
Sbjct: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60

Query: 61  KTIAKWSTGARVLEHPQNSTEVWLVDTVNRLATRAGLTMPEVAVYDGPPNAFATGASKSN 120
           KT+AKWSTGARV++ P N TE WL+ TV +LA RAG+ MPEVAVYDG PNAFATGA + +
Sbjct: 61  KTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 SLVAVSTGLLQGMTREEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           +LVAVSTGLLQGMT++EVEAVL HEVAHIANGDMVT+TLIQGVVNTFV+F +R+VG+FVD
Sbjct: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGFFVD 180

Query: 181 SALRRNNEQSSGPGIGYMVTVVVCEIVFGILASIIVMYFSRQREYRADAGAAKLMGSPTP 240
           SALRRN++  SGPGIGY VTV+VC+IVFGI AS+IV +FSR RE+RADAGAA+L+G+P P
Sbjct: 181 SALRRNSDD-SGPGIGYTVTVLVCQIVFGIGASLIVAWFSRHREFRADAGAARLLGTPQP 239

Query: 241 MIGALRRLGGMEADGLPQNLQASGIAGRGSWMGLFSSHPTIESRIASLQ 289
           MI AL RLGG   +GLPQNL A GI+ +   M LFS+HP +E RIA+L+
Sbjct: 240 MINALARLGGFSPEGLPQNLAALGISDKPGVMELFSTHPPLEQRIAALR 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,728
Number of extensions: 33816
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)