BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0188.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311280|ref|YP_003775372.1| phosphoglycerate mutase 2 prote...   125   2e-30

>gi|300311280|ref|YP_003775372.1| phosphoglycerate mutase 2 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  125 bits (314), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 116/209 (55%), Gaps = 27/209 (12%)

Query: 1   MLLHLIRHPQPVINKGLCYGSSDLAVTEE-------ECAKVLGQVKPALPPHVPVYSSPL 53
           M L LIRHP+P I++G CYGSSD+ V +E            L QV+   P    + +SPL
Sbjct: 1   MALLLIRHPRPRIDQGHCYGSSDVEVADEVWQASLAALLPSLLQVQ-QWPQRAAIVTSPL 59

Query: 54  QRCVFLAEPLALALNAGPVRYDPRLMEMHFGIWEQRAWDDLPRAEIDAWASDVVGYRPGG 113
           +RC  LA+ LA AL   P+  +P L EM FG WE RAWDD+  +E++AW  D++ Y PGG
Sbjct: 60  RRCAVLAQALADALRQ-PLVVEPDLREMDFGAWELRAWDDIAWSEVEAWNQDLLHYAPGG 118

Query: 114 GENVLNVAQRVDAFCSDLQQRGQSQA------IVVCHAGTIRL-----------LQARAL 156
           GE +  VA+R+      L++  Q++A      IVVCHAG+IR+           LQA A 
Sbjct: 119 GETLPAVARRMWRAWERLRRHAQAEADGVSDLIVVCHAGSIRMLRACAAWQAGQLQASAP 178

Query: 157 GLAVTKMAEHAAVNAHA-IAFGEVLTLKL 184
             A  +     AV     IA+GEV+ L L
Sbjct: 179 DAAALEAIALLAVQERGEIAYGEVMRLAL 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,048
Number of extensions: 24828
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)