BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0187.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311279|ref|YP_003775371.1| cobalamin-5-phosphate synthase ...   267   8e-73

>gi|300311279|ref|YP_003775371.1| cobalamin-5-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  267 bits (682), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 191/266 (71%), Gaps = 3/266 (1%)

Query: 3   VAPTPTPSG---GLRYQLQLFFTALQFFTRLPAPGWVGFDAAWLQHAARYFPAVGIIVSL 59
             PT +PS    GL YQL+LFFTALQFFTRLP P WVGF   WL H+ RYFP VG IV+ 
Sbjct: 2   TEPTSSPSAPGRGLLYQLRLFFTALQFFTRLPIPRWVGFHPDWLAHSTRYFPLVGWIVAW 61

Query: 60  ACAVVYWLAALWLPQVVAVLLSTAAGIYLTGAFHEDGFADVCDGFGGGMQPSRVLEIMRD 119
           A A+VY LA  + PQ VAVLL TAAGI+LTGAFHEDGFAD+CDG GG +   R LEIMRD
Sbjct: 62  ATALVYLLAVQFWPQPVAVLLGTAAGIWLTGAFHEDGFADLCDGLGGAVSRERALEIMRD 121

Query: 120 SRVGAYGVIGIVLLLATKIAGLVSLPALQVIPALLIAHPLSRCFAAALIWRMPYVREEGK 179
           SR+G+YGVIG+VLL+ T++A L +L   Q++ AL IAHPLSR  A  LIWRM YVREEGK
Sbjct: 122 SRLGSYGVIGLVLLMLTRLAALAALQPWQILAALGIAHPLSRWLATCLIWRMDYVREEGK 181

Query: 180 VKPLAQSMSNGEFAVAVVTAALPLVVCVAAGWLALQALLLAMLLGGAATWFLARKFQRRI 239
            K LAQ MS GEF VA V   +P++  VA G ++ Q + +   L   A  +LA + QRR+
Sbjct: 182 SKLLAQRMSTGEFLVATVWVVVPVIGTVALGLMSWQHIAMGCGLAALAALWLAYRLQRRL 241

Query: 240 GGYTGDCLGAVQQFSEVAIYLGLLAA 265
           GGYTGD LGAVQQ SE   YLG+LA+
Sbjct: 242 GGYTGDGLGAVQQLSETVFYLGVLAS 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,430
Number of extensions: 30850
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)