BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0186.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311278|ref|YP_003775370.1| nicotinate-nucleotide-dimethylb...   416   e-117

>gi|300311278|ref|YP_003775370.1|
           nicotinate-nucleotide-dimethylbenzimidazole-P
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 344

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/342 (67%), Positives = 263/342 (76%)

Query: 1   MRIPQLASTHDAALASALQAAIDNKTKPRGSLGVLEFVAHRIGLIQQSPMPRIDRTAVMV 60
           M+IP L S  DA L++ L   ID+KTKP GSLGVLE +A +IGLIQ +  P I R A++V
Sbjct: 1   MQIPTLVSPQDANLSARLDRLIDDKTKPLGSLGVLERLARQIGLIQATERPVIARPAIIV 60

Query: 61  FAADHGVVAENISAYPQSVTWQMVENFLQQGAAINVFARQNDCALHIVDAGVNHEFGERE 120
            A DHGV  E +SAYPQSVTWQMVENFL  GAAINVFARQN  ALHIVDAGVNH+FG R 
Sbjct: 61  CAGDHGVTDEGVSAYPQSVTWQMVENFLAGGAAINVFARQNGIALHIVDAGVNHDFGVRP 120

Query: 121 GLVSRKLGPGTRNFAQEPAMSAAQCEQALQHGMDLVAAMPVDVIGFGEMGIGNTTAAAAI 180
           GLV RK+ PGT NF + PAMS AQC  A++ GM  V  +  DV+GFGEMGIGNTTAAAA+
Sbjct: 121 GLVDRKVAPGTANFCRGPAMSQAQCAAAMEAGMRFVDTLQADVLGFGEMGIGNTTAAAAL 180

Query: 181 MHKITGIAAAECVGAGTGLGNGGILHKQQVIEQAVALHADADAPLEILRTFGGFEIAMIA 240
           M  +TGIA  +CVGAGTGL   G+  K   I +A+ LHA A  PLE L   GGFEIA + 
Sbjct: 181 MAALTGIAVQDCVGAGTGLDAQGVSRKADAITRALQLHAQAQTPLERLAALGGFEIAFMC 240

Query: 241 GAMLKAAERRMVLLIDGFIVTSALLVAAKLQPNILDYCLFSHCSDEHGHRRMLRHLDARP 300
           GAML+ A+RRMVL+IDGFIVTSALLVAA LQP +L+YC+FSHCSDE GH RML HL AR 
Sbjct: 241 GAMLRGAQRRMVLVIDGFIVTSALLVAAALQPVVLEYCVFSHCSDEAGHGRMLAHLGARA 300

Query: 301 LMQLDLRLGEGTGSALALPLLHAAVNFLAQMATFSSAQVSEK 342
           LMQLDLRLGEGTG+ALALPLL AAVNFLA MATFSSA VS K
Sbjct: 301 LMQLDLRLGEGTGAALALPLLQAAVNFLADMATFSSASVSGK 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 990,193
Number of extensions: 40083
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)