BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0185.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction ...   493   e-141
gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction ...   408   e-115
gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas...    55   7e-09

>gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  493 bits (1270), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/319 (73%), Positives = 278/319 (87%), Gaps = 3/319 (0%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60
           MD FQKEIDERTNLT+SNKFELLLFRLGTDP+G RSELFGINVFKIREIVPM  +TKAAG
Sbjct: 1   MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60

Query: 61  TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120
           T+SP+LGMVNIRGQIISVIDLPAV+GCVP +GLNILLVTEYARSTQAFAVESVDEIVRLE
Sbjct: 61  TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120

Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLEHIQ 180
           WSQVLSAE+ +GG FVTSIARLD D  +SRLAQVLDVEQILHEIMPT+RD++M  LE   
Sbjct: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLEKSA 180

Query: 181 ---LKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVP 237
              ++PG++ +AADDSKVARSL+E GL+A+ +P+ M  TGKEAWEK+Q + +E +++G P
Sbjct: 181 SHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAEGRP 240

Query: 238 ITDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 297
           I+D+++ VLTDLEMPEMDGFTLTRNIKR+D LK+IPV+IHSSLSGSANE+HV+++G D Y
Sbjct: 241 ISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGGDAY 300

Query: 298 VAKFVIEDLTAALIKALGK 316
           VAKF   +L A +   L K
Sbjct: 301 VAKFEANELAATIYGVLDK 319


>gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  408 bits (1048), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/319 (63%), Positives = 251/319 (78%), Gaps = 6/319 (1%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVR---SELFGINVFKIREIVPMQEITK 57
           MD+FQKEIDERTNLTS+NKFELLLFRLGT P G      EL+GINVFKIREIVPM +IT 
Sbjct: 1   MDSFQKEIDERTNLTSTNKFELLLFRLGT-PDGSTDKPGELYGINVFKIREIVPMMDITA 59

Query: 58  AAGTRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIV 117
           AAG RSP++GMVNIRGQ++SV+DLPAV GC    G NILL+TE+AR TQAFAVESV+EIV
Sbjct: 60  AAGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIV 119

Query: 118 RLEWSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMT--G 175
           RL+WSQVL A+S + G+ VTSIARLD ++   RL QVLDVE IL+ + P +  M+    G
Sbjct: 120 RLDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPG 179

Query: 176 LEHIQLKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQG 235
              ++LKPG+++LAADDS++AR+L+E  LK L LPF+M   G +AW+KLQ + +    +G
Sbjct: 180 AAELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEG 239

Query: 236 VPITDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGAD 295
            P+TD+VAMVLTDLEMPEMDGFTLTR IK  D  K +PVVIHSSL+GSANE+HV+++GA+
Sbjct: 240 KPLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGAN 299

Query: 296 GYVAKFVIEDLTAALIKAL 314
           GYVAKF   +L A L + L
Sbjct: 300 GYVAKFSPPELAAMLRQVL 318


>gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 19/136 (13%)

Query: 183 PGSIILAADDSKVARSLVESGLKALGLPFV-MCKTGKEAWEKLQDIYKETKSQGVPITDR 241
           P +  L  DD    R +V + LK LG   V   + G +A +KL+             +D+
Sbjct: 4   PNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLR-------------SDQ 50

Query: 242 VAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYVAKF 301
              V++D  MP MDG T+ + I++D  L  +PV++ ++ +   N       GA+GYV K 
Sbjct: 51  FDFVVSDWNMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVK- 109

Query: 302 VIEDLTAA-LIKALGK 316
                TAA L + LGK
Sbjct: 110 ---PFTAATLDEKLGK 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 888,186
Number of extensions: 34177
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)