BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0184.p (334 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 150 2e-37 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 148 5e-37 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 143 2e-35 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 125 4e-30 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 119 3e-28 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 157/326 (48%), Gaps = 12/326 (3%) Query: 19 NPL-----VVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAAVDEGPLRGTAGIR 73 NPL VV +AY G+ + + ++V G YR V + G + +AG+ Sbjct: 2 NPLHPPRRVVFLAYAGMNLLDLSGPMQVLATTNRLQGREVYRLHVVSAQGGTILTSAGLP 61 Query: 74 FLADGDCELIK--QAG----TIVIPGWRGLDA-PVPQHLSEALQVAHKKGARIMSICSGV 126 E+ + QA T++ PG D P+ L ++ + RI S+C+G Sbjct: 62 VGTQSLQEMDRLLQATPDLHTLISPGGSSGDQFPLDAALVAWIRQHAQAAVRICSVCTGA 121 Query: 127 AVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGGIDLCLH 186 +A AG+L G +VT HW A L + YP + V D +Y+ G I +S G GIDL L Sbjct: 122 FHLAEAGVLDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLALA 181 Query: 187 LIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEHAVPELHEAGKLGSLLDEMRAHLAKTY 246 L+ +D G +A AR++++ R GGQ+QF + AG+ L + AHLA Sbjct: 182 LVEQDLGHASAIATARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWIAAHLADDL 241 Query: 247 SIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEIARLIGF 306 +E +A MS RTF R + + G TP R + L RL A LE T + ++ IA G+ Sbjct: 242 HVENLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGY 301 Query: 307 SSTSTFRQQFQKRYSLSPMAYRKMFS 332 R+ F ++ +SP YR+ F+ Sbjct: 302 GEEQNLRRVFLRQLGVSPGQYRERFA 327 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 148 bits (374), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 164/343 (47%), Gaps = 19/343 (5%) Query: 1 MPKFAKFVPEQLSLPKLANPLVVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAA 60 M + + F+P + S LA VV +A++G + + VF E+ Y VA+ Sbjct: 1 MTEISDFLPHRPS--HLAARTVVFIAFDGAEPLDLMGPIGVFSRAE-ELAPGSYALRVAS 57 Query: 61 VDEGPLR-----GTAGIRFLADGDCELIKQAGTIVIPGWRGLDAPVPQH-----LSEALQ 110 VD LR AGI L+ + L T+++ G G + + Q L E L Sbjct: 58 VDGALLRTRSPLSLAGIVPLSSIEGRL----DTVLVAG--GHEQAIHQAATEVALVEWLN 111 Query: 111 VAHKKGARIMSICSGVAVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGD 170 ++ RI SIC+G V+ AAGLL GR VT HW L Q++P V PD +Y DG Sbjct: 112 RRGRQARRIGSICTGAFVLGAAGLLDGRYVTTHWAAVDLLQQYFPKAKVDPDAIYRIDGP 171 Query: 171 ILSSTGGAGGIDLCLHLIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEHAVPELHEAGK 230 I +S G GIDL L L+R D G + A+ +AR +++ HR G Q Q V + Sbjct: 172 ICTSAGVTTGIDLALALVRDDLGQEIASAIARDLVLFLHRPGRQQQISATLVAQQSAGDL 231 Query: 231 LGSLLDEMRAHLAKTYSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYL 290 +LL M H + S+ +A MS R F RRF +G P ++++ R+ A +L Sbjct: 232 FSALLVWMLDHPQEDMSVNALAERAAMSPRNFARRFLREVGKPPGQYVLELRIDHACRHL 291 Query: 291 ENTVISIEEIARLIGFSSTSTFRQQFQKRYSLSPMAYRKMFSD 333 E T SIE IA G + T + F++ ++P YR ++ Sbjct: 292 EKTGWSIERIAERSGLKNADTLHRVFRQHLGMTPAQYRARLAE 334 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 146/290 (50%), Gaps = 3/290 (1%) Query: 41 VFGLDRPEMGANWYRFAVAAVDEGPLRGTAGIRFLADGDCELIKQAGTIVIPGWRGLDAP 100 VF G +YR +V G L + G+R +V L++P Sbjct: 22 VFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKAAATASIDTWVVCGVGNPLESP 81 Query: 101 VPQHLSEALQVAHKKGARIMSICSGVAVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQ 160 LQ A KK RI IC+G V+A AGLL R+ T HW A + + +PD+ V+ Sbjct: 82 ASAEECAFLQRAAKKARRIAGICTGGFVLAEAGLLARRRATTHWAFARAMQERFPDIQVE 141 Query: 161 PDVLYVDDGDILSSTGGAGGIDLCLHLIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEH 220 D +Y+ DG + +S G G+DL L ++ +D G +AA VAR++++ HR GGQ+Q E Sbjct: 142 DDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARSVARKLVMHQHRAGGQSQHSE- 200 Query: 221 AVPELH-EAGKLGSLLDEMRAHLAKTYSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLV 279 + EL + ++ L+ R +L + ++EE+A N+S R F R FTS G +P + + Sbjct: 201 -MLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSARQFTRVFTSETGQSPAKAIE 259 Query: 280 LERLAKAVDYLENTVISIEEIARLIGFSSTSTFRQQFQKRYSLSPMAYRK 329 RL A +E + +E +AR GF R+ F + + ++P + R+ Sbjct: 260 GLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGFGVAPQSMRR 309 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 110/210 (52%), Gaps = 3/210 (1%) Query: 122 ICSGVAVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGGI 181 IC+G V+AA GLL G++ T HW+ A L Q +P V V D +Y DG + +S G + GI Sbjct: 105 ICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGI 164 Query: 182 DLCLHLIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEHAVPELHEAG-KLGSLLDEMRA 240 DL L LI D G + A VAR ++V R GGQ+QF A+ E+ ++ L R Sbjct: 165 DLALALIEDDHGVELARSVARELVVYHRRPGGQSQF--SALQEMDGGSERIRRALGFARE 222 Query: 241 HLAKTYSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEI 300 HL + +++ +A +SRR F R F + G TP R + R A +E + ++E I Sbjct: 223 HLHQALTVDLLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESI 282 Query: 301 ARLIGFSSTSTFRQQFQKRYSLSPMAYRKM 330 AR GF R+ + + P A R++ Sbjct: 283 ARATGFGDADRMRRACLRLFGQPPQAMRRL 312 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/326 (28%), Positives = 154/326 (47%), Gaps = 30/326 (9%) Query: 24 VVAYNGLCTFEFAIAVEVFGLDRPEMGA-----NWYRFAVAAVDEGPLRGTAGIRFLADG 78 V+ G+ + A EVF + + + N Y F++ +V G + ++ ++ G Sbjct: 38 VIVSEGVILADLAEIAEVFFVTDKMLSSMFSQGNGYHFSLLSVRGGMITTSSSVQI---G 94 Query: 79 DCEL----IKQAGTIVIPGWRG--LDAPVPQHLSEALQVAHKKGARIMSICSGVAVMAAA 132 L I+ +I+I RG D PQ L+ L A RI ++C+GV V+A A Sbjct: 95 TLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLN-WLATAALHAPRIAALCTGVLVLAEA 153 Query: 133 GLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGGIDLCLHLIRRDF 192 GLL +KV HW L + +PD+ V+P V D ++ +S G ++ L LI D Sbjct: 154 GLLDRKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSADSGTGAEVALALIEDDL 213 Query: 193 GTKAANVVARRMIVTPHRDGGQAQFIEHAVP---------ELHEAGKLGSLLDEMRAHLA 243 G+ A+ + + + V H QF +H++ + H + ++ L + H++ Sbjct: 214 GSSFAHRIEQSLTVRQHH-----QF-KHSLSRGSEIRPGEKRHRSERIQKALIWLDEHMS 267 Query: 244 KTYSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEIARL 303 + ++ E A V+MS R F R F G TP +L R+ A YL+ T + IE+IAR Sbjct: 268 SSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKETDLPIEKIARR 327 Query: 304 IGFSSTSTFRQQFQKRYSLSPMAYRK 329 G S + F+K + +SP YRK Sbjct: 328 CGLVSGEHLARLFRKHHGVSPGEYRK 353 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,082,020 Number of extensions: 46761 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 9 Length of query: 334 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 248 Effective length of database: 1,212,660 Effective search space: 300739680 Effective search space used: 300739680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)