BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0175.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311263|ref|YP_003775355.1| pyridoxal phosphate biosyntheti...   384   e-108

>gi|300311263|ref|YP_003775355.1| pyridoxal phosphate biosynthetic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  384 bits (986), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/252 (80%), Positives = 226/252 (89%)

Query: 1   MSFLNPVGPAIELGINIDHVATLRNARGTTYPDPIQAALQAEEAGADAITLHLREDRRHI 60
           MSFL P GPAIELGINIDHVATLRNARGT YPDPI+AAL+AEEAGADAITLHLREDRRHI
Sbjct: 1   MSFLQPAGPAIELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60

Query: 61  RDADVEAIRPLLRTRMNLEAAVTSEMIDFSCRIKPQDSCLVPEKRTEITTEGGLDVVTHF 120
           RD DV+AIRPLL+TRMNLEAAVT EMIDF+C I+PQD CLVPEKRTE+TTEGGLDVV HF
Sbjct: 61  RDDDVKAIRPLLQTRMNLEAAVTREMIDFACFIRPQDVCLVPEKRTEVTTEGGLDVVGHF 120

Query: 121 AQVQAAVKQLQAEGIRVSLFIDPDDEQIKAAAETGAPVIELHTGRYAEAHDQAEMAKELE 180
           A VQAA++QLQ E IRVSLFID D +QIKAAAE+GAPVIELHTGRYA+A  + E  +ELE
Sbjct: 121 ADVQAAIRQLQQEQIRVSLFIDADVQQIKAAAESGAPVIELHTGRYADATSEQEQQEELE 180

Query: 181 RVRAGVLEGIRRGLKVNAGHGLHYTNVQAIAAIPDIAELNIGHAIVAQAVFVGWHKAVSD 240
           R+R  V EG++ GLKVNAGHGLHYTNVQAIAAIP+IAELNIGHA+VA AVF GW  AVS+
Sbjct: 181 RIRLAVQEGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240

Query: 241 MKAIMLRARLDA 252
           MKAIM++ARL+A
Sbjct: 241 MKAIMIKARLEA 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,795
Number of extensions: 24875
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)