BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0161.p (413 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 780 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 223 2e-59 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 117 2e-27 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/413 (92%), Positives = 403/413 (97%) Query: 1 LSRSRERRVVITGLGCISPVGNNIADAWGAVKEGKSGIATITKFDATPFSTHFAGEVKGF 60 +SR+RERRVVITGLGCISPVGNN+AD W A+KEGKSGIAT+TKFDATPF+THFAGEVKGF Sbjct: 1 MSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF 60 Query: 61 NIEDYIPAKEARHMDTFIHFGMAAGMQAFQDSGLVVTDENAERIGVIIGSGIGGLPLIEQ 120 NIEDYIPAKEARHMDTFIHFGMAAG+QA QDSGL VTDENAERIGV+IGSGIGGLPLIE+ Sbjct: 61 NIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEE 120 Query: 121 THEELTNRGPRRISPFFIPASIINMISGNLSIKYGLKGPNLAIVTACTTGLHCIGSASRM 180 TH ELTNRGPRRISPFFIPASIINMISGNLSIK+GLKGPNLAIVTACTTGLHCIGSA+RM Sbjct: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180 Query: 181 IQYGDADVMIAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 I YGDADVM+AGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG Sbjct: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 Query: 241 VMVLEEYEHAKARGAKIYAEVLGFGMSGDAYHMTAPSLDGPRRCVVSALRDAGVNADEVH 300 VMVLEEYEHAKARGAKIYAE+LGFGMSGDAYHMTAP+LDGPRRCV++ALRDAGVN DEV Sbjct: 241 VMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQ 300 Query: 301 YLNAHGTSTPLGDKNETDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLESVFTVLALH 360 YLNAHGTSTPLGDKNE+DAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLE+V TVLA+H Sbjct: 301 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH 360 Query: 361 NQISPPTINIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVFGKV 413 NQ+SPPT+NIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLV GK+ Sbjct: 361 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM 413 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 141/418 (33%), Positives = 214/418 (51%), Gaps = 12/418 (2%) Query: 1 LSRSR-ERRVVITGLGCISPVGNNIADAWGAVKEGKSGIATITKFDA-TPFSTHFAGEVK 58 ++R+R ERRVV+TG+ ISP+G + A +K G + + + +D T Sbjct: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 Query: 59 GFNIEDYIPAKEARHMDTFIHFGMAAGMQAFQDSGLVVTDE---NAERIGVIIGSGIGGL 115 F++ + K R M A A D+GL+ D+ + ++G+ GS G Sbjct: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLL--DDPLLKSGQLGIAYGSSAGTP 118 Query: 116 PLIEQTHEELTNRGPRRISPFFIPASIINMISGNLSIKYGLKGPNLAIVTACTTGLHCIG 175 I + R I+ + + N+ + +G+ G + +ACT+G IG Sbjct: 119 NAIADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIG 178 Query: 176 SASRMIQYGDADVMIAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVL 235 A I+ G M+AGGAE + F + A S RND P P+D+DRDG VL Sbjct: 179 YAYETIRSGRQLAMVAGGAEE-LCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVL 237 Query: 236 GEGAGVMVLEEYEHAKARGAKIYAEVLGFGMSGDAYHMTAPSLDGPRRCVVSALRDAGVN 295 GEGAG ++LE+ EHA+ARGA I+AE++GFG + D H+T P+ + + AL DAG+ Sbjct: 238 GEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLP 297 Query: 296 ADEVHYLNAHGTSTPLGDKNETDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLESVFT 355 A + Y+NAHGT T GD ET A FG ++S KS GH LG G LE+ + Sbjct: 298 ASAIGYINAHGTGTRQGDVAETQATARVFGK---ATPISSLKSYMGHTLGACGALEAWLS 354 Query: 356 VLALHNQISPPTINIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVFGK 412 + + + PTIN+ + DP+C +LDY R ++ + + N+F FGG N +L+F + Sbjct: 355 IEMMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 106/416 (25%), Positives = 182/416 (43%), Gaps = 35/416 (8%) Query: 9 VVITGLGCISPVGNNIADAWGAVKEGKSGIATITKF-DA--TPFSTHFAGEVKGFNIEDY 65 + + LG + P+G+ + G SG+ ++ DA P + + +D+ Sbjct: 3 LYLNALGMVCPLGSAHDAIRTRLLAGVSGLRADARYLDAHGEPLALGAVPDDTRLPEDDH 62 Query: 66 IPAKEARHMDTFIHFGMAAGMQAFQDSGLVVTDENAERIGVIIGSGIGGLPLIEQTHEEL 125 +P +E + +AA + + AERIG+++G+ G+ E Sbjct: 63 LPLRERSRNN---RLALAALQRIRVQVDAAIARYGAERIGIVLGTSTSGI--AEGEAAFA 117 Query: 126 TNRGPRRISP-FFIPASIINMISGNLSIKYGLKGPNLAIVTACTTGLHCIGSASRMIQYG 184 P + + + L + G GP +AC + I SA+R++ G Sbjct: 118 ARAASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMG 177 Query: 185 DADVMIAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGVMVL 244 D ++ GG ++ + I GF + ++S + +P + R G +GEGA + +L Sbjct: 178 LCDAVLCGGVDT-LCQFTIAGFTALESVSAQRCNPLSL------HRQGINIGEGAALFLL 230 Query: 245 EEYEHAKARGAKIYAEVLGFGMSGDAYHMTAPSLDG--PRRCVVSALRDAGVNADEVHYL 302 A ++ G+G S DAYH++AP +G + + ALR AG+ A ++ Y+ Sbjct: 231 TREPAA--------VQLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYI 282 Query: 303 NAHGTSTPLGDKNETDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLESVFTVLALHNQ 362 N HGT+TP D E+ ++A FG ++ V+STK TGH LG A +E+ L + + Sbjct: 283 NLHGTATPQNDAMESKVVQALFG---LEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDD 339 Query: 363 ----ISPPTINIFNQDPECD--LDYCANQARDMKIDIAVKNSFGFGGTNGTLVFGK 412 + PP + DP Q + + NSF FGG+N LVF + Sbjct: 340 NPDGLLPPHLWDGVADPALPALAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,301,231 Number of extensions: 54728 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 3 Length of query: 413 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 325 Effective length of database: 1,203,190 Effective search space: 391036750 Effective search space used: 391036750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)