BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0156.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311248|ref|YP_003775340.1| malonyl CoA-[acyl-carrier-prote...   574   e-165
gi|300311990|ref|YP_003776082.1| malonyl CoA-[acyl-carrier-prote...    58   8e-10

>gi|300311248|ref|YP_003775340.1| malonyl CoA-[acyl-carrier-protein]
           transacylase [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  574 bits (1480), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/310 (91%), Positives = 299/310 (96%)

Query: 1   MTTFAFVFPGQGSQAIGMLNGFADNEVVKATVAEASDALQFDLGKLIAEGPKEDLDLTTN 60
           MTTFAFVFPGQGSQAIGMLNGFADN+VV+ TVAEASDALQFDLGKLIAEGPKEDLDLTTN
Sbjct: 1   MTTFAFVFPGQGSQAIGMLNGFADNDVVRQTVAEASDALQFDLGKLIAEGPKEDLDLTTN 60

Query: 61  TQPVMLTAAVAFYRAWIAAGGKAPALVAGHSLGEYSALVAAGVIAFKDAVPLVRFRAQAM 120
           TQPVMLTAAVAFYRAW+AAGGKAPALVAGHSLGEYSALVAAGVIAFKDAVPLVRFRAQAM
Sbjct: 61  TQPVMLTAAVAFYRAWLAAGGKAPALVAGHSLGEYSALVAAGVIAFKDAVPLVRFRAQAM 120

Query: 121 QEAVPVGQGGMAAILGLSDDDVRAACAEAAQGDVVEAVNYNSPAQVVIAGSKAAVERACE 180
           QEAVPVGQGGMAAILGLSD+DVRAACAEAAQGDVVEAVN+N+PAQVVIAG KAAVERAC+
Sbjct: 121 QEAVPVGQGGMAAILGLSDEDVRAACAEAAQGDVVEAVNFNAPAQVVIAGHKAAVERACD 180

Query: 181 IAKAKGAKRALVLPVSAPFHSSLLKPASDRLQQYLAGVPFSAPQIPLINNVDVAIVNDPA 240
           IAKAKGAKRAL LPVSAPFHSSLLKPASDRLQ YLA V FSAPQIPLINNVDVA+VNDPA
Sbjct: 181 IAKAKGAKRALPLPVSAPFHSSLLKPASDRLQAYLANVAFSAPQIPLINNVDVAVVNDPA 240

Query: 241 AIKDALVRQAASAVRWVETVQKMSTEGITHVVECGPGKVLAGLTKRINGELVGEAIVDQA 300
           AIKDALVRQAA+ VRWVETVQKM+ EG+TH+VECGPGKVL GLTKRING+LVGEAIVDQ 
Sbjct: 241 AIKDALVRQAAAPVRWVETVQKMAAEGVTHLVECGPGKVLTGLTKRINGDLVGEAIVDQE 300

Query: 301 SLDKVLELLK 310
           SL+KVLE LK
Sbjct: 301 SLNKVLESLK 310


>gi|300311990|ref|YP_003776082.1| malonyl CoA-[acyl-carrier-protein]
           transacylase [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 133/314 (42%), Gaps = 15/314 (4%)

Query: 4   FAFVFPGQGSQAIGMLNGFADNEVVKATVAEA--SDALQFDLGKLIAEGPKEDLDLTTNT 61
            A + PGQG+Q  G+ +   ++E   A + +   +D L   L +++++     L    N 
Sbjct: 5   LAILCPGQGAQHAGLFDLLREDEQAAAFLDQLPLTDYLDAPLAQVLSQ--PTHLYANGNA 62

Query: 62  QPVMLTAAVAFY---RAWIAAGGKAPALVAGHSLGEYSALVAAGVI--AFKDAVPLVRFR 116
           Q +++ A +A +   R  +AA    P  VAG+S+GE SA   A VI      A+   R  
Sbjct: 63  QVLIVAAQLAAWQALREPLAAIAGPPVAVAGYSVGELSAYAVAEVIDPVAAVALAAQRAA 122

Query: 117 AQAMQEAVPVGQGGMAAILGLSDDDVRAACAEAAQGDVVEAVNYNSPAQVVIAGSKAAVE 176
           A         GQG MA  LG  D      C       V      ++   ++  GS  A+E
Sbjct: 123 AMDAAARSRPGQGLMA--LGGIDLAAAQDCLLRHGAHVAIVTGDDT---LIAGGSSPALE 177

Query: 177 RACEIAKAKGAKRALVLPVSAPFHSSLLKPASDRLQQYLAGVPFSAPQIPLINNVDVAIV 236
                   +GA R  VLPV    H+ L++ A       L G+   AP+  L+  V    +
Sbjct: 178 AVAAELAGRGA-RTTVLPVGLASHTPLMQAAVTPFAAALEGLSLHAPKTALLAGVSGQGI 236

Query: 237 NDPAAIKDALVRQAASAVRWVETVQKMSTEGITHVVECGPGKVLAGLTKRINGELVGEAI 296
            D       L+RQ    ++W   +      G+T  +E GPG  L+ + +  +  L   ++
Sbjct: 237 ADAHQACALLLRQLTEPIQWAACMDACVERGVTVALELGPGAALSRMLRERHPHLSCRSL 296

Query: 297 VDQASLDKVLELLK 310
            D  SL  +L  L+
Sbjct: 297 ADFRSLSGLLSWLR 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,000,658
Number of extensions: 42819
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)