BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0155.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311247|ref|YP_003775339.1| 3-oxoacyl-[acyl-carrier-protein...   562   e-161
gi|300313493|ref|YP_003777585.1| 3-oxoacyl-(acyl-carrier-protein...   119   3e-28

>gi|300311247|ref|YP_003775339.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase III [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  562 bits (1449), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/328 (84%), Positives = 304/328 (92%)

Query: 1   MTLYSKIVGTGSYLPPKRVTNDELAQQLAKKGIETSDEWIFSRSGISARHYAEADVLSSD 60
           MT YSKI+GTGSYLP KRVTN ELA QLA++GIETSDEWI +RSGISARHYAE   LSSD
Sbjct: 1   MTTYSKIIGTGSYLPAKRVTNQELAAQLAEQGIETSDEWIVTRSGISARHYAEPAELSSD 60

Query: 61  LAVAASQRALEAAGLQANDIDLIILATSTPDHLGGFPSTACVVQRKLGINNGGAAMDVQA 120
           LA+ A+QRAL+AAGLQ NDIDLII+ATSTPDHLGGFPSTACVVQRKLGI NG  AMDVQA
Sbjct: 61  LALQAAQRALQAAGLQPNDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA 120

Query: 121 VCSGFVYAMSVADSFIKTGMHKNVLVIGAEVFSRILNFEDRTTCVLFGDGAGAIVMTASK 180
           VCSGFVYAMSVADSFIK+G HKNVLVIGAEVFSRIL+F+DRTTCVLFGDGAGA+VM+AS+
Sbjct: 121 VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVVMSASQ 180

Query: 181 EPGILAAKLHADGSHGHILCVPGNVNDGAVAGNAYLYMDGPAVFKLAVSVLDKVAREVLE 240
           EPG+LA KLHADGSHGHILCVPG+VN+GAVAG+AYLYMDGPAVFKLAVS+LDKVARE LE
Sbjct: 181 EPGVLATKLHADGSHGHILCVPGSVNNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE 240

Query: 241 IAKVDAKEVDWLIPHQANIRIMQGTARKLGLPLEKMVVTVDEHGNTSAASIPLALDQAVR 300
            A + + +VDWL+PHQANIRIMQGTA+K+GLPLEKMVVTV EHGNTSAASIPLALDQAVR
Sbjct: 241 AANMQSTDVDWLVPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR 300

Query: 301 DGRVKPGQNVMMEGVGGGFTWGAVLARM 328
           DGR++PG  VMMEGVGGGFTWGAVL RM
Sbjct: 301 DGRIQPGHTVMMEGVGGGFTWGAVLVRM 328


>gi|300313493|ref|YP_003777585.1| 3-oxoacyl-(acyl-carrier-protein)
           synthase III [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 166/316 (52%), Gaps = 22/316 (6%)

Query: 13  YLPPKRVTNDELAQQLAKKGIETSDEWIFSRSGISARHYAEADVLSSDLAVAASQRALEA 72
           YLP  R +N +LA +      + +++++ ++ G+  R        +SD+A  A ++ L  
Sbjct: 11  YLPSGRESNLDLASRF-----DVTEDFLANKIGVLHRTTRSPGQETSDMAFEALEQLLRQ 65

Query: 73  AGLQANDIDLIILATSTPDHLGGFPSTACVVQRKLGINNGGAAMDVQAVCSGFVYAMSVA 132
             +  ++I ++I+ T  PD     P  + ++  +  +    A  D+   CSG+VY +SV 
Sbjct: 66  GKVVRDEIQVMIVVTQNPD--SRLPHVSGLLHARAALPKQCATFDLSLGCSGYVYGLSVL 123

Query: 133 DSFIK-TGMHKNVLVIGAEVFSRILNFEDRTTCVLFGDGAGAIVMTASKEPGILAAKLHA 191
            SF++  G+ K VL I  + +S+I++ ED+ T +LFGD A A ++ A  +P ++ A    
Sbjct: 124 TSFMQANGLEKGVL-ITCDPYSKIVDPEDKNTVLLFGDAATATLVGA--DPVLVPASFDF 180

Query: 192 DGSHGHILCVPGNVNDGAVAGNAYLYMDGPAVFKLAVSVLDKVAREVLEIAKVDAKEVDW 251
            GS G      G++++     +  L+M+G  VF  A +V+       LE A +D +++D 
Sbjct: 181 -GSQGD---ATGSLHE----RDGRLHMNGRDVFNFAATVVPGSVTATLEKAGLDREDIDV 232

Query: 252 LIPHQANIRIMQGTARKLGLPLEKMVVTVDEHGNTSAASIPLALDQAVRDGRVKPGQNVM 311
            + HQ +  I++   ++L L   K+ + +++ GNT ++SIPL L + + +      Q ++
Sbjct: 233 YLFHQGSRYIVETLTKRLKLDSAKVRIDINDTGNTVSSSIPLLLAKELHN---TIAQRIL 289

Query: 312 MEGVGGGFTWGAVLAR 327
           + G G G +W + + +
Sbjct: 290 LCGFGVGLSWASCICQ 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,043,787
Number of extensions: 42537
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)