BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0154.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311246|ref|YP_003775338.1| fatty acid/phospholipid synthes...   601   e-173

>gi|300311246|ref|YP_003775338.1| fatty acid/phospholipid synthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  601 bits (1550), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/354 (80%), Positives = 319/354 (90%)

Query: 1   MTIKISIDCMGGDHGPSVTIPAAISFLQREPDAELILVGQEEALRAALRKHKQGNISRLH 60
           MTIKISIDCMGGDHGPSVT+PAA SFL+R+ DAELILVGQE  L+  L+K+K    +R+ 
Sbjct: 1   MTIKISIDCMGGDHGPSVTLPAAASFLKRQSDAELILVGQEAVLQPLLKKYKLAGEARIR 60

Query: 61  VQHAAEVVTMDDSIEVALRRKKDSSMRVAINLVKEGRASAAVSAGNTGALMAVSRYVLKT 120
           + +A EVVTM+D +EVALRRKKDSS+RVA+ LVK+G+A AAVSAGNTGALMAVSRYVLKT
Sbjct: 61  IHNATEVVTMEDPVEVALRRKKDSSLRVAVTLVKDGQAQAAVSAGNTGALMAVSRYVLKT 120

Query: 121 IPGVDRPAICTILPNQKDGPTYMLDLGANVDCEPQHLHQFALMGSALVSAMEGKPRPTVG 180
           +PGVDRPAICTILPNQKDGPTYMLDLGANVDCEPQHLHQFALMGSALV+ MEGK +PTVG
Sbjct: 121 LPGVDRPAICTILPNQKDGPTYMLDLGANVDCEPQHLHQFALMGSALVAVMEGKAKPTVG 180

Query: 181 LLNVGEEEIKGNEVVKQTAELLHADHEKGLINFYGNVEGNDIFEGTTDIVVCDGFVGNVT 240
           LLNVGEE++KGNE+VK TA LL ADHEKG++NFYGNVEGNDIFEGTTD+VVCDGFVGNVT
Sbjct: 181 LLNVGEEDMKGNELVKATAGLLRADHEKGILNFYGNVEGNDIFEGTTDLVVCDGFVGNVT 240

Query: 241 LKASEGLGRFVKIVLTTEFKKGFFNKLGALIAYGAIKALSRRLNPSRYNGASLLGLRGLV 300
           LKASEGLGRFVK VLT+EFKKG  NKLGALIAYGAIKALSRRLNPSRYNGASLLGL+GLV
Sbjct: 241 LKASEGLGRFVKQVLTSEFKKGLVNKLGALIAYGAIKALSRRLNPSRYNGASLLGLKGLV 300

Query: 301 FKSHGGADAYAFEWAIQRAYDAAKYDVLSRITTTIAELIPQAEGAVERVNAITS 354
           FKSHGGAD YAFEWAI+RAYDAAKYDVL+RI  ++AEL+PQ +G      A+ S
Sbjct: 301 FKSHGGADVYAFEWAIRRAYDAAKYDVLARIAASMAELMPQGQGRTAEAAALAS 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,091,622
Number of extensions: 45157
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)