BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0152.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311244|ref|YP_003775336.1| metal-binding, possibly nucleic...   197   2e-52

>gi|300311244|ref|YP_003775336.1| metal-binding, possibly nucleic
           acid-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  197 bits (502), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 114/135 (84%)

Query: 1   VIDAFEFSRLKEQAEGELAVADMARLAGETADRAGVLKWSLSGGADKVGHPQLKLSVSGQ 60
           VIDAF+F RLK+QA+GE+ VA++ RLA ET DR+G ++W+LSG  DK+GH QL L+VSG 
Sbjct: 5   VIDAFDFCRLKQQAQGEIPVAELGRLAQETVDRSGTIRWALSGDIDKLGHAQLSLAVSGA 64

Query: 61  VNLVCQRCLTAMPFTVSSESVLVLAKDEESADAIEELLNDESIDVIVGEAEFNVGYLVED 120
           VNL+CQRCLTA+ F + S+S+LVLAKDE  ADAIEELL+D+ IDVIVG A F+V YL+ED
Sbjct: 65  VNLICQRCLTALNFEIDSKSLLVLAKDEAQADAIEELLDDDEIDVIVGSAAFDVNYLIED 124

Query: 121 EALLALPVAPKHDXC 135
           EALLALPVAPKHD C
Sbjct: 125 EALLALPVAPKHDKC 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 422,133
Number of extensions: 15618
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)