BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0151.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum form...   259   1e-70
gi|300312858|ref|YP_003776950.1| inhibition of septum formation ...    81   7e-17

>gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum
           formation inhibitor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 226

 Score =  259 bits (663), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/198 (72%), Positives = 161/198 (81%), Gaps = 1/198 (0%)

Query: 9   RLILASSSIYRRELLSRLQLPFEVIAPDIDETPAAGESPEATALRLARWKGDAVAQRHPD 68
           RLIL SSS+YR++LL RL LPFE + PDIDETP AGE+PEATALRLAR K  A+A R   
Sbjct: 27  RLILGSSSVYRKQLLERLGLPFETMTPDIDETPQAGETPEATALRLARAKAAAIAARAGA 86

Query: 69  ALIISSDQVATLDGEQIGKPGNHANAMKQLIKMRGRRVIFHTALCLSDHRNPEAP-VIQI 127
           AL+I SDQVATLDG+QIGKPGNHANA++QL  MRGR VIFHTALCL D R  +A    Q+
Sbjct: 87  ALVIGSDQVATLDGQQIGKPGNHANALRQLQMMRGREVIFHTALCLWDGRRTDAAQAAQL 146

Query: 128 ENIQTFVTFRDLPDAELDAYLRIEQPYDCAGSAKNEGLGIAILERIDSTDPTALTGLPMI 187
            N+QT V  RDL DAELDAYL IEQPYDCAGSAKNEGLGIAILE I S DPTALTGLP+I
Sbjct: 147 CNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAKNEGLGIAILESIRSDDPTALTGLPLI 206

Query: 188 ALTGMLRKAGMPFFGVAA 205
           ALT MLR+AG+ FFG+ A
Sbjct: 207 ALTTMLRQAGVGFFGLTA 224


>gi|300312858|ref|YP_003776950.1| inhibition of septum formation
           nucleotide-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 204

 Score = 81.3 bits (199), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 5   PALPRLILASSSIYRRELLSRLQLPFEVIAPD--IDETPAAGESPEATALRLARWKGDAV 62
           PA  ++ LAS S  RRELL ++ + FE++  D  +DE+   GE+P     R+ R K D+ 
Sbjct: 3   PADQKIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPMDYVARVTRAKLDSA 62

Query: 63  AQ-----RHPDALIISSDQVATLDGEQIGKPGNHANAMKQLIKMRGRRVIFHTALCLSDH 117
            Q     + P   ++S+D    +D   +GKP +H  A++ +  + GR     T++ +   
Sbjct: 63  QQTMILRQLPHRPLLSADTTVVVDDLILGKPADHDEAVRMISLLSGRTHQVLTSVAVGVT 122

Query: 118 RNPEAPVIQIENIQTFVTFRDLPDAELDAYLRIEQPYDCAGSAKNEGLGIAILERIDSTD 177
              E  V QI   Q+ V+F  L +  + AY    +PYD AG+   +GL    +  I  + 
Sbjct: 123 MGVETQVWQIVQ-QSDVSFAPLTEQAIAAYCHTVEPYDKAGAYGIQGLASVFISNIVGSH 181

Query: 178 PTALTGLPMIALTGMLRKAGM 198
            + + GLP+     +L++AG+
Sbjct: 182 -SGIMGLPLFETAQLLQQAGV 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 765,038
Number of extensions: 32528
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)