BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0140.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311235|ref|YP_003775327.1| seryl-tRNA synthetase [Herbaspi...   803   0.0  

>gi|300311235|ref|YP_003775327.1| seryl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/432 (89%), Positives = 408/432 (94%), Gaps = 1/432 (0%)

Query: 1   MIDIQLLRKDIDNVAARLAARKFQLDVAAFNALEGERKQIQTRTEELQGKRNSLSKQVGM 60
           MIDIQLLRKDI+NVAARLAARKF LDVA FNALE ERKQIQTRTEELQGKRNSLSKQ+GM
Sbjct: 1   MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60

Query: 61  LKGKGEDASAVMAEVSGIGDELKASAARLEEVQVQLSDFLLTLPNLPHESVPAGADESGN 120
           LKGK EDASAVMAEV+GIGDELKASA RLEEVQ Q++ FL  +PNLPHESVP G DESGN
Sbjct: 61  LKGKCEDASAVMAEVNGIGDELKASATRLEEVQQQMNLFLQAVPNLPHESVPVGNDESGN 120

Query: 121 VELRKVGTPRTFDFEVKDHVDVGAALGLDFDVATKLTGSRFAVMKGGIARLHRALAQFML 180
           VELRKVGTPR FDFE+KDHVDVGAALGLDFD ATKLTGSRFAV+KGGIARLHRALAQFML
Sbjct: 121 VELRKVGTPRQFDFEIKDHVDVGAALGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180

Query: 181 DTHTLEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGDSSDNAALYLIPTA 240
           +THT+EHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEG+ ++NAALYLIPTA
Sbjct: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGE-AENAALYLIPTA 239

Query: 241 EVPLTNLVRDEIVAGDTLPLKMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHP 300
           EVPLTN VRDEIVAGD LP+K TAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHP
Sbjct: 240 EVPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHP 299

Query: 301 EKSYEALDEMLGHAENILKKLGLPYRVITLCTGDMGFGAAKTFDIEVWLPAQNTYREISS 360
           E+SY+ALDEMLGHAE ILKKLGLPYRVITLCTGDMGFGAAKT+DIEVWLPAQ TYREISS
Sbjct: 300 EQSYDALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQKTYREISS 359

Query: 361 VSNCEAFQARRMQARFRNSQGKPELVHTLNGSGLAVGRTLVAVLENGQQADGSVTIPEVL 420
           VSNCEAFQARRMQARFRN+QGKPEL+HTLNGSGLAVGRTLVAVLEN QQADGSV IPE L
Sbjct: 360 VSNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVDIPEAL 419

Query: 421 RPYMGGLEKLAP 432
           +PYMGG+ +L P
Sbjct: 420 QPYMGGVTRLVP 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,334,131
Number of extensions: 56741
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)