BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0138.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311234|ref|YP_003775326.1| hypothetical protein Hsero_1909...   177   7e-46

>gi|300311234|ref|YP_003775326.1| hypothetical protein Hsero_1909
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  177 bits (448), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 8/197 (4%)

Query: 5   PSQPPLIAYLIGFALSACCAIWAGSQFALTGSSIGYGVLTGLAFGAMFAFGQRVKNRLFP 64
           P   P++  L+G   +    +WAG  +    +S+ YG++ GL+FGA FAFGQ++KNR  P
Sbjct: 60  PRDVPVLFSLLGLVAAFALGLWAGIHYMSNDASLFYGLIAGLSFGAAFAFGQQIKNRFVP 119

Query: 65  TPESTK--WKINAGPSAADLRPAKRAAARAKPVTVAFDDEFIKTARAGAELESIAWQDVE 122
            P++ K  WK+ A P AA+L PA+ AA +A+ ++V FDDE I+T   GA+ E IAW +V+
Sbjct: 120 -PKARKSDWKVQA-PGAAELSPARLAAQQARKISVEFDDEEIRTMVRGAKREGIAWAEVK 177

Query: 123 RIVITIGDDFLPMPYWMLA--TAKG--GIRLPNDTPGLESLMEEFKVKLPGYDNDATYAA 178
            + I I +  LP P W+L+  +A+G  GI +PND  GLE LM+  K +LPGYDND  Y+ 
Sbjct: 178 DVTIRISEGHLPQPEWILSGQSAEGIKGILVPNDADGLEELMQAMKQRLPGYDNDQNYST 237

Query: 179 VIAAMGAMEGVFEVWKK 195
           VIAAM AMEG F VW +
Sbjct: 238 VIAAMSAMEGSFHVWSR 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,675
Number of extensions: 23139
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)