BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0134.p (775 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb... 1285 0.0 gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ... 721 0.0 >gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 780 Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust. Identities = 664/777 (85%), Positives = 712/777 (91%), Gaps = 5/777 (0%) Query: 1 MTKTSQAYTRNTKAAETPQLPSRLVRLLYEARWLAMATLLVYLTLILLTYSRSDPGWSVA 60 M+KTSQA+ RNTKA P +PSRLVRLL EARWLA++ LLVYL LILL+YS++DPGWSVA Sbjct: 1 MSKTSQAHIRNTKAP-APPMPSRLVRLLSEARWLALSALLVYLVLILLSYSKTDPGWSVA 59 Query: 61 NSVPHLHNWGGRVGAWMADLMLYIFGMSTWWWCVLLGHSIWRSYRRLANRFLVQKEAEPE 120 +SVP + NWGGRVGAWMADLMLYIFG+S WWWCVL S+W YRRL+NRFLV + EPE Sbjct: 60 SSVPRVGNWGGRVGAWMADLMLYIFGLSAWWWCVLAARSVWTGYRRLSNRFLVAQPVEPE 119 Query: 121 HHQEGLIRAIGFVFLLAGSLGIEYMRMYTMKAPMPRAPGGVLGEMIGSAAQTSLGFTGAT 180 H QE LIRA+GFVF+L GS+GIE+ RM+ +P + GGVLGEMIGSA Q + GFTG+T Sbjct: 120 HQQEPLIRAVGFVFMLTGSMGIEFTRMHRFAPKLPHSSGGVLGEMIGSAVQPTFGFTGST 179 Query: 181 LLLLLLFGLGFSLFFHVSWLAAVERIGGAIEDGIFWIRNFYSAREDRKVGHVAAVKREEV 240 LLLL+LFGLGFSL FHVSWLAAVERIGG IEDG+FW+R+F++AR DRK G AAVKREE Sbjct: 180 LLLLMLFGLGFSLLFHVSWLAAVERIGGLIEDGLFWVRDFFAARADRKAGQEAAVKREET 239 Query: 241 VVQERAKIDEAPPIRIEPQVVAVPRSERIEKERQTSLFQDIDSSLPPLSLLDEAPPAQQT 300 VVQERAKI EAPPIRIEPQ+V V +S+R++KE+QTSLF D+ + LPPLSLLDEAPP+QQT Sbjct: 240 VVQERAKIVEAPPIRIEPQIVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQT 299 Query: 301 VSVETLEFTSRLIEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVGLARDLAR 360 VSVETLEFTSRLIEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIV LARDLAR Sbjct: 300 VSVETLEFTSRLIEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLAR 359 Query: 361 SLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILSSKVYNDSHSSLTIALGKDIAGN 420 SLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEIL SKVYNDSHSSLT+ALGKDIAGN Sbjct: 360 SLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGN 419 Query: 421 PVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSTPKQVRLILIDPKMLELSIYEGI 480 PVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSTP+QVRLILIDPKMLELSIYEGI Sbjct: 420 PVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSTPRQVRLILIDPKMLELSIYEGI 479 Query: 481 PHLLAPVVTDMRQAGHALNWAVAEMERRYKRMSKLGVRNLAGYNQKIIDADKRGEKIPNP 540 PHLLAPVVTDMRQAGHALNWAV EMERRYK+MSKLGVRNLAGYNQKI DA+KRGEKIPNP Sbjct: 480 PHLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGYNQKIADAEKRGEKIPNP 539 Query: 541 FSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRP 600 FSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRP Sbjct: 540 FSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRP 599 Query: 601 SVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAEALLGMGDMLYMPPGTGLPIRVHG 660 SVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAE LLGMGDMLY PPGTGLP+RVHG Sbjct: 600 SVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHG 659 Query: 661 AFVSDEEVHRVVDHLKEQGEPNYIEGILEGGVAE----DADGAVGGAAGGGEGDELYDQA 716 AFVSD+EVHRVV+HLK QGEPNYIEGILEGGV E GA G AGGGEGDE+YDQA Sbjct: 660 AFVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQA 719 Query: 717 VAVVLKNRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGNT 773 VAVVLK+RRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG + Sbjct: 720 VAVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGAS 776 >gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/526 (69%), Positives = 426/526 (80%), Gaps = 10/526 (1%) Query: 253 PIRIEPQVVAVPRSERIEKERQTSLFQDIDSSLPPLSLLDEAPPAQQTVSVETLEFTSRL 312 P EP V++ + +++ R ++ LP L LLDE P ++ V E L+ T RL Sbjct: 5 PTAPEPAPVSMAYPDYVDEPR-------VEIPLPSLDLLDEVPESRIEVDTEQLQETGRL 57 Query: 313 IEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVGLARDLARSLSLTSIRVVEV 372 IE++L +F V V V+ A GPVITR+E+EPA GV+G+Q+V L +DL+R+L LTSIRVVE Sbjct: 58 IEQRLKEFKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVET 117 Query: 373 IQGKNYMGLELPNPKRQIVRLTEILSSKVYNDSHSSLTIALGKDIAGNPVVADLAKMPHL 432 I GK MGLELPN +RQ+++L+EI+ S+ Y S S LTIA+GKDI G PVV DLA+ PH+ Sbjct: 118 IPGKTCMGLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTDLARAPHM 177 Query: 433 LVAGTTGSGKSVGINATILSLLYKSTPKQVRLILIDPKMLELSIYEGIPHLLAPVVTDMR 492 LVAGTTGSGKSV INA ILSLLYK+TP++VRLI+IDPKMLELSIYEGIPHLLAPVVTDMR Sbjct: 178 LVAGTTGSGKSVAINAMILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMR 237 Query: 493 QAGHALNWAVAEMERRYKRMSKLGVRNLAGYNQKIIDADKRGEKIPNPFSLTPDAPEPLE 552 +A HALNWAV EMERRYK+MSKLGVRNLAGYNQK+ +A RGEKIPNPFSLTPDAPEPLE Sbjct: 238 EAAHALNWAVDEMERRYKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLE 297 Query: 553 QLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKAN 612 +L TIVI+IDELADLMMVVGKKVEELIAR+AQKARAAGIHLILATQRPSVDVITGLIKAN Sbjct: 298 KLPTIVIVIDELADLMMVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKAN 357 Query: 613 VPTRIAFQVSSKIDSRTILDQMGAEALLGMGDMLYMPPGTGLPIRVHGAFVSDEEVHRVV 672 +PTR+AFQVSSKIDSRT+LDQMGAE+LLG GDML++PPG+G P RVHGAFVSDEEVHRVV Sbjct: 358 IPTRVAFQVSSKIDSRTVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVV 417 Query: 673 DHLKEQGEPNYIEGILEGGVAED---ADGAVGGAAGGGEGDELYDQAVAVVLKNRRASIS 729 ++LK GEP YIE IL ++ED AD G G E D LYD+AVA VLK RRASIS Sbjct: 418 EYLKSFGEPRYIEEILAPPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASIS 477 Query: 730 LVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGNTTE 775 VQR LRIGYNRAARL+EQME +G++S M NG+R+ILVP E Sbjct: 478 SVQRQLRIGYNRAARLVEQMETAGVLSAMSRNGSRDILVPPSGGVE 523 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,216,356 Number of extensions: 88933 Number of successful extensions: 336 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 2 Length of query: 775 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 682 Effective length of database: 1,179,515 Effective search space: 804429230 Effective search space used: 804429230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)