BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0132.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311225|ref|YP_003775317.1| hypothetical protein Hsero_1900...   289   1e-79

>gi|300311225|ref|YP_003775317.1| hypothetical protein Hsero_1900
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  289 bits (739), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/214 (72%), Positives = 181/214 (84%), Gaps = 2/214 (0%)

Query: 1   MATIKDFSALKSLRKDLKAQEEARLAAERQRLEDEKRLRTEADIFRSSVGKIAPLRSN-- 58
           MAT+KDF+ALK LR+DL+ QE+AR  A  +R   E  +R EA++FR+S+G+IAPLRS   
Sbjct: 4   MATMKDFAALKGLRRDLQEQEKARALALAERARQEAAIREEANLFRNSIGQIAPLRSKAI 63

Query: 59  EKAALFPPQPLPIARHHIADEQAALMESLSDEFTFDTLLDTDENLSFARPGVGSDVLSKL 118
           +KA   P  PLPI R H+ADEQAAL+ESLSDEFT DTL+D+DENLSFARPGVG DVLSKL
Sbjct: 64  DKALHLPDAPLPIPRQHLADEQAALLESLSDEFTIDTLMDSDENLSFARPGVGMDVLSKL 123

Query: 119 RRGHWTIQNQLDLHGLRRDEAREALGEFLRXPGRRGQRCVRIIHGKGLGSVNKEPVLKQK 178
           RRG+W IQ QLDLHG RRD+AREALGEFLR   RRG RCVR+IHGKGLGSVNKEPVLK K
Sbjct: 124 RRGNWVIQAQLDLHGYRRDQAREALGEFLRQSRRRGLRCVRVIHGKGLGSVNKEPVLKHK 183

Query: 179 VRNWLAQKEEVVAFCQAQPADGGSGALIVLLQSS 212
           VRNWLAQK+EV+AFCQA+ ADGG+GAL+VLL+SS
Sbjct: 184 VRNWLAQKDEVMAFCQARAADGGAGALVVLLKSS 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 588,525
Number of extensions: 21324
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)