BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0125.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311220|ref|YP_003775312.1| nitrogen regulatory P-II protei...   187   2e-49
gi|300309430|ref|YP_003773522.1| nitrogen regulatory PII-like pr...   172   4e-45

>gi|300311220|ref|YP_003775312.1| nitrogen regulatory P-II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  187 bits (474), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 108/112 (96%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVVDNSVVEPVVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGAEAV 112
           IEVVVD+ VVE  VDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETG +AV
Sbjct: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112


>gi|300309430|ref|YP_003773522.1| nitrogen regulatory PII-like
           protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  172 bits (437), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 99/112 (88%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK +TAIIKPFKLDEVRE+L+ +GV G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEVVVDNSVVEPVVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGAEAV 112
           IE  VD+++VE  ++AI  AARTGKIGDGKIFVQ++  VIRIRTGETG +A+
Sbjct: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 223,365
Number of extensions: 5067
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)