BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0123.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311218|ref|YP_003775310.1| hypothetical protein Hsero_1893...   600   e-173

>gi|300311218|ref|YP_003775310.1| hypothetical protein Hsero_1893
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  600 bits (1546), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/375 (76%), Positives = 319/375 (85%)

Query: 7   YRTRIISSLAEVGQPAWDALLAAQAGATPFLSYAFLHALHESGSAAKDTGWEPQYLTLWQ 66
           YRTRI+SSLAE+GQ  WDAL+A Q    PFLSYAFLHALHESGSA+ ++GWEP YLTLWQ
Sbjct: 22  YRTRIVSSLAEIGQARWDALVATQEEGNPFLSYAFLHALHESGSASAESGWEPHYLTLWQ 81

Query: 67  GDALQAALPLYLKYHSYGEYVFDWAWAEAYERHGLPYYPKLLSAIPFTPVSGGRLLAVDD 126
            ++L AALPLY K+HSYGEYVFDWAWAEAY+RHG+ YYPKLLSAIPFTPV G RL+A+D+
Sbjct: 82  DESLAAALPLYRKFHSYGEYVFDWAWAEAYQRHGVEYYPKLLSAIPFTPVRGARLMAIDE 141

Query: 127 TARQALVQALQQLQEAAQTSSTHVLYPPAAEAQTLAEAGFMLRSGVQFHWHNEGYRDFAE 186
           TAR AL++ALQ+LQ+  Q SSTH+LYPP  +A  LAEAGF+LRSGVQFHWHNEGY  FA+
Sbjct: 142 TARVALLEALQRLQQQGQHSSTHILYPPEQQAGQLAEAGFLLRSGVQFHWHNEGYGSFAD 201

Query: 187 FLATLERKKRKNILAERRKVGEAGVTFRHLRGDEAGEGDWRFFHRCYRHTYAAHHSTPYL 246
           F+ TL+RKKRKNILAERRKV E GV F  LRG E  +  WRFF+RCYRHTYAAH+STPYL
Sbjct: 202 FVDTLDRKKRKNILAERRKVAEQGVRFVWLRGAEITDAHWRFFNRCYRHTYAAHYSTPYL 261

Query: 247 NLDFFLRIAAQMPQHLLLTVAYRDGKPVASSLVVYDDDALYGRYWGALEEIPCLHFETAY 306
           NLDFF RI A MPQHLLLT+A R  +P+ASSL V+D D LYGRYWGALE +PCLHFETAY
Sbjct: 262 NLDFFRRIGATMPQHLLLTLALRGEEPIASSLTVHDADTLYGRYWGALEHVPCLHFETAY 321

Query: 307 YQPLEFCIDNKIAWFEGGAQGEHKMARGFLPQKTWSAHWLAHPSFADAVERFLEREGGGI 366
           YQPLEFCI  KI+WFEGGAQGEHKMARGFLPQKTWSAHWLAHP F DAVE FL RE  GI
Sbjct: 322 YQPLEFCIAEKISWFEGGAQGEHKMARGFLPQKTWSAHWLAHPGFYDAVEHFLSRESNGI 381

Query: 367 DDYLSELNERNPFRD 381
           D Y+SELNE NPFRD
Sbjct: 382 DGYISELNEHNPFRD 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,243,170
Number of extensions: 52636
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)