BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0118.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312229|ref|YP_003776321.1| porphobilinogen deaminase [Herb...   444   e-126

>gi|300312229|ref|YP_003776321.1| porphobilinogen deaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  444 bits (1141), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/306 (75%), Positives = 264/306 (86%)

Query: 27  LKEFPPSSLVIASRESRLAMWQAEHVRDRLAALYPQCSITILGMTTRGDQILDRTLSKVG 86
           +KEFPPS++VI SRESRLAMWQAE+VRDRLAALYPQCSI+ILG TTRGDQILDR LSKVG
Sbjct: 1   MKEFPPSNIVIVSRESRLAMWQAEYVRDRLAALYPQCSISILGTTTRGDQILDRALSKVG 60

Query: 87  GKGLFVKELEVAMAEGRADFAVHSLKDVPMELPGGFVLGAILEREDPRDAFVSNDYAGLD 146
           GKGLFVKELEVAMAEGRAD AVH LKD+PM+LP GF L AILEREDPRDAFVSNDYA LD
Sbjct: 61  GKGLFVKELEVAMAEGRADLAVHCLKDMPMDLPEGFELAAILEREDPRDAFVSNDYAALD 120

Query: 147 ELPAGAVVGTSSLRRQALIAARYPHLVIKPLRGNLDTRLGKLDRGDYAAIILAVAGLKRL 206
           ELP GAVVGTSSLRRQA+IAARYP LV+KPLRGNLDTRL KLDRGDYAAIILAVAGL RL
Sbjct: 121 ELPDGAVVGTSSLRRQAMIAARYPQLVVKPLRGNLDTRLAKLDRGDYAAIILAVAGLNRL 180

Query: 207 GLESRIRSAIAPEQSLPAPGQGAMAIEILAERTDLQRVLAPINHLATDRAVTAERTLSRT 266
           GL++RIRS + P QSLP+PGQG +AIEI   R D++R+LAP++         AER++SR 
Sbjct: 181 GLKARIRSFLDPAQSLPSPGQGTLAIEIPEGREDIKRLLAPLHDEPAAVVSAAERSVSRI 240

Query: 267 FGGSCQIPLAAFATIAGDRMHMRALVATPDGKQVAAAEAEGPADAPAALGKQIADLLQTQ 326
           FG SCQIPLAA+AT+ G R+H+RA++ATPDG   AAAEAEGPA AP ALG Q+A+LL+ +
Sbjct: 241 FGASCQIPLAAYATLDGQRLHLRAMIATPDGLHAAAAEAEGPAAAPEALGAQVAELLKAR 300

Query: 327 GAEAIL 332
           GA+ IL
Sbjct: 301 GADDIL 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,007,511
Number of extensions: 43518
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)