BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0115.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313852|ref|YP_003777944.1| drug/metabolite transporter (DM...   133   2e-32

>gi|300313852|ref|YP_003777944.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 151/292 (51%), Gaps = 15/292 (5%)

Query: 1   MKPADLLRLLALSAIWGASFLFMRLAVPEMGALNTAFFRVLFGAAGLLLLLAILRVKWRF 60
           M  ++L +LL L+AIWG SF+ MR+A P  G + T F R       LL    +  V  ++
Sbjct: 1   MSSSNLCKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLALLAFARVRGVPMQW 60

Query: 61  QGKLHATMLLGAINSGLPFVLFSLAAKVLPAGYSAILNGTAPLMGVVIGALFFGDTLTSR 120
           +      +++G  N+ LPF LF+ +A  +P+ Y A +N  AP+   + G L  G+ L+  
Sbjct: 61  RSNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPVFTAMFGFLLMGERLSLV 120

Query: 121 KVGGVILGLAGVAVLTRTGPVDFDTATVLGALACLLATSCYGLASFLTKRWITDRGGLDS 180
           +    +LGL GVAVL   GP   D   + G LA + A   YG A+  T+      GG+  
Sbjct: 121 RCAAFVLGLVGVAVLVGIGPAPADAMVIAGVLAAMGAAVSYGFAATFTR---LRAGGISP 177

Query: 181 KLVACGSQLGAVALLLPFFAVMAVLEDGPAAPLHAGI-GTWFALLALGFVCSALAYILFF 239
             +A GSQ  A         +       P A L AG      A+L LG VC+ +AY LFF
Sbjct: 178 IALATGSQFAAALC-----LLPLAAPSMPHA-LQAGTLPALLAVLVLGVVCTGIAYALFF 231

Query: 240 RLIADIGPVKSLTVTFLIPLFGVLWGWLFLQEQLSWAYAAGGALIGMALLLV 291
           +LIA  G  K++TVTFL+P+   LW WL L E ++      G + G+A++LV
Sbjct: 232 QLIAAEGATKAITVTFLVPMTASLWAWLLLDEPVTL-----GTVTGIAIVLV 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 874,381
Number of extensions: 32050
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)