BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0108.p (187 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 233 6e-63 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 139 2e-34 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 115 2e-27 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 115 2e-27 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 102 2e-23 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 233 bits (595), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/234 (57%), Positives = 154/234 (65%), Gaps = 61/234 (26%) Query: 15 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGKVIF 74 ILQV+DLAV+YGHIEAVKGISL+LNEGEITALVGANGAGKSTSLLAISGLVKA RG+V+ Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 75 NGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAV--------XI 126 +G+D+ Q SPHRIV SGVVQVAEGRATLTTLT+EENL LGAYTRKDK V + Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSL 129 Query: 127 FRIVK---------------------------------EINKTGMTVLLVEQNVR----- 148 F ++K + G+ L++++ R Sbjct: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 Query: 149 ---------------QALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLGG 187 QALRIAQRGYVLETGKIVLED+GANLL NPKVVEAYLGG Sbjct: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 119/233 (51%), Gaps = 60/233 (25%) Query: 14 VILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGKVI 73 ++LQ + YG IEA+ G+SL + +GEI L+GANGAGK+T L+ + G +A+ G+VI Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 74 FNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSL------------------GA 115 F G+DITQ H I+ G+ EGR +LT+ ENL + G Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGL 120 Query: 116 YTR-KDKAA-----------------------------------------VXIFRIVKEI 133 + R K++AA IF I++ I Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 134 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 186 ++G+TV LVEQN +AL +A RGYVLE G +V+ DTGANLL N V +AYLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 63/235 (26%) Query: 15 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAAR--GKV 72 IL+VQ L+V+YG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A+R G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 73 IFNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAV-------- 124 + G+ + + +V + V EGR T ++I+ENL +GAYT DK + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 125 XIFRIVKEI---------------------------------NKTGMTVLLVE------- 144 +F +KE G++ ++VE Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 145 -------------QNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 186 QN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 63/235 (26%) Query: 15 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAAR--GKV 72 IL+VQ L+V+YG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A+R G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 73 IFNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAV-------- 124 + G+ + + +V + V EGR T ++I+ENL +GAYT DK + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 125 XIFRIVKEI---------------------------------NKTGMTVLLVE------- 144 +F +KE G++ ++VE Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 145 -------------QNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 186 QN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 102 bits (253), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 60/231 (25%) Query: 14 VILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGKVI 73 +ILQV+D+ YG ++G+SL ++ GE+ L+G NGAGK+T+L +I G+V +G+V+ Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 74 FNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAA-----VXIFR 128 F G+ I+ ++I GV V E R LT+EENL++ A RK+ A IF Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAA--RKESAWGLEEIYAIFP 118 Query: 129 IVKE-----------------------------------------------------INK 135 +KE I Sbjct: 119 RLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKA 178 Query: 136 TGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 186 TGM+++LVEQN+ ++A R Y++E G+IV + A L + V + YLG Sbjct: 179 TGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLG 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.132 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 520,805 Number of extensions: 19815 Number of successful extensions: 295 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 65 Length of query: 187 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 107 Effective length of database: 1,241,070 Effective search space: 132794490 Effective search space used: 132794490 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)