BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0101.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 444 e-126 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 275 4e-75 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 244 5e-66 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 236 2e-63 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 169 3e-43 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 444 bits (1143), Expect = e-126, Method: Compositional matrix adjust. Identities = 228/319 (71%), Positives = 279/319 (87%), Gaps = 4/319 (1%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 +TKPYTDV T+KPMVSFTA V ++G GVVAAA+FLDGVS+VV+++HPTPASFAFLVDR Sbjct: 134 LTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSIHPTPASFAFLVDR 193 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 DG+MLAHPD QW+NKP K+WN+ELT ERLN+LA AD AS E++L GAAKLV+ V +K Sbjct: 194 DGLMLAHPDGQWVNKPAKEWNAELTPERLNALA---ADDKAS-EVMLEGAAKLVKGVPIK 249 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 GTEWTL++A+DKADV AG+R+A++S+LIA+VLVA +AA I+ LITTAVF+RLS+VR AMD Sbjct: 250 GTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQRLSRVRRAMD 309 Query: 181 SIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGN 240 ++ SG+GDLT+RL EDG DEV+QI+RSFN FV +IT ILQ++R +SD VK+SS+EIA+GN Sbjct: 310 NLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKISSTEIATGN 369 Query: 241 LDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVV 300 DLS RTEQQAG+LEETASAMEELTSTV+QNS+NAR+AN+LA AS IA +GGEVVGNVV Sbjct: 370 QDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQGGEVVGNVV 429 Query: 301 ATMEAINQSSRQIVDIIGV 319 +TMEAIN SSRQI DII V Sbjct: 430 STMEAINASSRQIADIITV 448 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 275 bits (703), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 163/319 (51%), Positives = 212/319 (66%), Gaps = 7/319 (2%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 +T PY D T K +V+F V LQ V+ + V LD V V + PTP+SFAF+V + Sbjct: 132 LTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGK 191 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 DG+++ HP+ + KPV + L+A+ SLAG G S I G L+ + Sbjct: 192 DGVIITHPNKELALKPVSSLDQTLSAQ---SLAGMK--QGGSATI--GGIRYLLFTQPIA 244 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 T+W+L+VA+D + + S + VL +A++L T + RRL VRNAM+ Sbjct: 245 NTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAME 304 Query: 181 SIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGN 240 I SGDGDLT RL GKDE++QI+R+FN F KI+ L +IR S++VKVSSSEIASGN Sbjct: 305 EIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGN 364 Query: 241 LDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVV 300 +DLS RTEQQAGSLEETASAMEELTSTV+QN+DNARQANQLA++AS +A GG+VVG VV Sbjct: 365 MDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVV 424 Query: 301 ATMEAINQSSRQIVDIIGV 319 ATM +IN+SSR+IVDII V Sbjct: 425 ATMSSINESSRKIVDIISV 443 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 244 bits (624), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 146/320 (45%), Positives = 205/320 (64%), Gaps = 5/320 (1%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 +T PYT T K +V+F V KDG + V AA V LD V V A+ PTP S+AFL D Sbjct: 154 LTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPTPNSYAFLADL 213 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 G ++AHP+ + KP+ D ++ +T + L+ G +++ L+G +++ V Sbjct: 214 SGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRT----GVHQDVALDGRRQMLFVARVG 269 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 GT+W L+VA+D+AD A + SS + VLV LAAL+LG + + + RL+ V+ A++ Sbjct: 270 GTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTVVQGALE 329 Query: 181 SIGSGDGDLTMRLPEDGK-DEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASG 239 I GDGDLT RL G+ DE+ +I +FN FV KI ++ +IR S + +S +IASG Sbjct: 330 EIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASG 389 Query: 240 NLDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNV 299 N+DLS RTE QA SLE+TA+AME+LTS+VR N+DNA QANQL+ +AS IA +GG +V V Sbjct: 390 NMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQV 449 Query: 300 VATMEAINQSSRQIVDIIGV 319 V TM IN SS++IVDII V Sbjct: 450 VQTMNGINASSQKIVDIISV 469 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 236 bits (603), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/307 (46%), Positives = 203/307 (66%), Gaps = 6/307 (1%) Query: 14 MVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDRDGMMLAHPDAQWI 73 +V+ V +DGVL+ VV V LD V +K++HPTP+SF LV++ G ++AHPDAQ Sbjct: 145 LVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHPTPSSFGMLVEQGGRIIAHPDAQLR 204 Query: 74 NKPVKDWNSELTAERLNSLAGNNADHGASK-EIVLNGAAKLVQAVAVKGTEWTLLVAIDK 132 K SEL E + L NA G IV++G KLV+ AV GT+W ++VAID+ Sbjct: 205 FKQA----SELAPE-FSDLNVANAGPGQPPVHIVVDGREKLVRVQAVPGTDWNIVVAIDQ 259 Query: 133 ADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMDSIGSGDGDLTMR 192 + +AG+R SSL+++V V A+LI +T FRRL Q+ AM +IGSG GDLT R Sbjct: 260 QEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRRLGQISAAMTAIGSGSGDLTQR 319 Query: 193 LPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGNLDLSGRTEQQAG 252 LP+ G+DEV+ IA+SFN FV K+ +++++IR + V+V+S EIA+ N DLS RTE A Sbjct: 320 LPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVASDEIAAANHDLSVRTESAAA 379 Query: 253 SLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVVATMEAINQSSRQ 312 SLE+TA++M E+++TV +++ A +A+Q + AA+ IA +GG+VV + VATM I + S Q Sbjct: 380 SLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGGKVVSDAVATMGEIEKVSAQ 439 Query: 313 IVDIIGV 319 I DII V Sbjct: 440 IGDIISV 446 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/173 (52%), Positives = 126/173 (72%), Gaps = 3/173 (1%) Query: 148 IAIVLVAALAALILG-LITTAVFRRLSQVRNAMDSIGSGDGDLTMRLPEDGKDEVSQIAR 206 +A + A LAA+ILG L+ ++ + L++ +++ +GD LT R+ +DE Q+ + Sbjct: 196 LACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGD--LTTRIEPHSRDETGQLMQ 253 Query: 207 SFNVFVQKITAILQEIRHTSDAVKVSSSEIASGNLDLSGRTEQQAGSLEETASAMEELTS 266 + + I+ +R ++++ +S EIASGNLDLS RTEQQAGSLEETASAMEE+TS Sbjct: 254 ALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTS 313 Query: 267 TVRQNSDNARQANQLALAASAIAKEGGEVVGNVVATMEAINQSSRQIVDIIGV 319 TVRQN+DNARQANQ+A++AS IA +GG++VG VV TM+ INQSSR+IVDIIGV Sbjct: 314 TVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGV 366 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 842,866 Number of extensions: 29311 Number of successful extensions: 322 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 65 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)