BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0099.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidoh...   275   3e-75
gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase...   196   2e-51
gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum ...    87   2e-18
gi|300313544|ref|YP_003777636.1| transmembrane protein [Herbaspi...    82   4e-17

>gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid
           amidohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  275 bits (703), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 163/198 (82%)

Query: 83  AWPAAAVAAFVEVHIEQGPLLLNEALPVGVVTAISGATRFMAELQGLAGHAGTVPMHMRR 142
           AW   ++AAFVEVHIEQGPLLLNE LPVGVVTAISGA+RFMAE+ GLAGHAGTVPMH+RR
Sbjct: 185 AWQPGSMAAFVEVHIEQGPLLLNEDLPVGVVTAISGASRFMAEVHGLAGHAGTVPMHLRR 244

Query: 143 DAAMTAAEIGLYIEQRCSGRPGLVGTMGIMEVPNGAANVVPGSARFSIDIRAGQDAVRED 202
           DAAM AAEIGLYIE+RCS +P LVGTMG++EV  GAANVVPG A FSIDIRA  D+ R  
Sbjct: 245 DAAMAAAEIGLYIERRCSIKPELVGTMGLLEVVQGAANVVPGLASFSIDIRAEDDSDRLA 304

Query: 203 AVADVEAEIARICARRNVSITLRKTHQAGSVPCADRLQQQLANAIDACGLPVRHLPSGAG 262
           AVADV+AEI RI ARR V + LR+TH+A SVPCA RLQ  LA +I A G PVRHLPSGAG
Sbjct: 305 AVADVKAEIDRIAARRQVQLALRQTHEAASVPCAPRLQAALAQSIAAAGWPVRHLPSGAG 364

Query: 263 HDAMAMATIADVAXRHQR 280
           HDAMA+A +ADVA    R
Sbjct: 365 HDAMALAGLADVAMLFVR 382


>gi|300312555|ref|YP_003776647.1| bifunctional OHCU
           decarboxylase/N-carbamoyl-L-amino acid amidohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 587

 Score =  196 bits (499), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 135/196 (68%), Gaps = 2/196 (1%)

Query: 87  AAVAAFVEVHIEQGPLLLNEALPVGVVTAISGATRFMAELQGLAGHAGTVPMHMRRDAAM 146
           A + A+VEVHIEQGP+LL   LPVG+VT+I+G++R++ +L+G+A HAGT PM MR+DAA 
Sbjct: 355 AEILAYVEVHIEQGPVLLKRDLPVGIVTSIAGSSRYLVDLKGVASHAGTTPMDMRKDAAA 414

Query: 147 TAAEIGLYIEQRCSG--RPGLVGTMGIMEVPNGAANVVPGSARFSIDIRAGQDAVREDAV 204
            AAEI LY+EQRCS      LVGT+G ++VP G+ NV+PG+ + S+DIRA  D VR  AV
Sbjct: 415 AAAEIILYVEQRCSQDQHAALVGTVGQLQVPRGSTNVIPGACQLSLDIRAATDEVRLAAV 474

Query: 205 ADVEAEIARICARRNVSITLRKTHQAGSVPCADRLQQQLANAIDACGLPVRHLPSGAGHD 264
            D+ A+I  IC RR++ + L +T  A + PCA  L  QL+ A    G+P   L SGAGHD
Sbjct: 475 KDILAKIEEICTRRSIDLKLEETLSAPAAPCAPWLMAQLSAATQRAGVPPFELASGAGHD 534

Query: 265 AMAMATIADVAXRHQR 280
           AMAM  + DV     R
Sbjct: 535 AMAMVRLTDVCMLFTR 550


>gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 419

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 25/197 (12%)

Query: 89  VAAFVEVHIEQGPLLLNEALPVGVVTAISGATRFMAELQGLAGHAGTVPMHMRRDAAMTA 148
           + A+ E HIEQGP+L N    +GVV A+ G + +   + G   HAG  PM +R+D    A
Sbjct: 189 IGAYYEAHIEQGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKD----A 244

Query: 149 AEIGLYIEQRCSG-----RPGLVGTMGIMEVPNGAANVVPGSARFSIDIRAGQDA----V 199
            ++  YI Q          P   GT+G ++V   + NV+PG  +FSID+R   +A    +
Sbjct: 245 LQVSTYIMQEVVAIAHRYAPYGRGTVGQVQVMPNSRNVIPGQVKFSIDLRNVSEASLTRM 304

Query: 200 REDAVADVEAEIARICARRNVSITLRKTHQAGSVP----CADRLQQQLANAIDACGLPVR 255
            ED +A +EA    +  +  +SI L +       P    C D+++   A    A G    
Sbjct: 305 HEDLLAYLEA----MRKKTGLSIELERVSYFPPCPFHPDCVDKVRAASA----ALGYKTM 356

Query: 256 HLPSGAGHDAMAMATIA 272
            + SGAGHDA+  A +A
Sbjct: 357 DVVSGAGHDAIYAARLA 373


>gi|300313544|ref|YP_003777636.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)

Query: 1   VQEVITQRCASCHSAQPTQAGFATAPA-GMMLQTPELIRQHAAKVYQRAVQTKDMPLANM 59
           VQ+VI  RC  CH+AQPT       P  G++L +PE I QHA ++YQ+AV  K MPL NM
Sbjct: 333 VQQVIQARCIQCHAAQPT---LMPVPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNM 389

Query: 60  THMTDEERALIGRRRQ 75
           TH+T+EERA+IG+  +
Sbjct: 390 THITEEERAVIGKWFE 405


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 883,234
Number of extensions: 30738
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 4
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)