BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0098.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313544|ref|YP_003777636.1| transmembrane protein [Herbaspi...   192   2e-50

>gi|300313544|ref|YP_003777636.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  192 bits (487), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 127/179 (70%), Gaps = 5/179 (2%)

Query: 7   SYGVEWLNLLVRWLHLIAGIAWIGASFYFVWLDNSIRPPKPGSDLAKKGVSGELWAVHGG 66
           +Y ++WLNLL+RWLH+I  IAWIG+SFYFVWLDNS+  P    +L +KGV GELWAVHGG
Sbjct: 3   AYILDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPT-DPELKEKGVGGELWAVHGG 61

Query: 67  GFYNPQKYLVAPSELPEELHWFKWEAYATWISGFAMLFIVYYFNASAMMVDKSVADLTGL 126
           GFYNPQKYL+AP  LPE LHWF WE+Y+TW+SGFA+  ++Y FNA+  +VD++V D++  
Sbjct: 62  GFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNANVFLVDRNVFDMSAS 121

Query: 127 QSVGVGLGTLVLGWIVYDLLCKSPLGKREG---LLGAVMFVFIVAVAYVLTHLLSGHAG 182
            + G  +  L+  W++YD +C S +G R G   L+  ++ + +V   +   HL SG A 
Sbjct: 122 MAGGAAIAFLIFNWLIYDAIC-STIGDRPGADRLVNLLVGLQVVVSVWAACHLFSGRAA 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 633,280
Number of extensions: 25282
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)