BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0095.p
         (437 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312918|ref|YP_003777010.1| xanthine/uracil permease [Herba...    99   1e-21

>gi|300312918|ref|YP_003777010.1| xanthine/uracil permease
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 189/388 (48%), Gaps = 54/388 (13%)

Query: 49  GIRMPVMMGVTFAAVGPMVAMA----NNPSLSILHIYGAVIASG-----IFCILASPYMS 99
           G R+P  +G +F+ +G ++A+     + P+ ++    G +IA G     I  I+A     
Sbjct: 79  GGRVPSYLGSSFSFIGLVIAVTGYAGSGPNTNLGVALGGIIACGAVYAVIGLIVAGVGTR 138

Query: 100 KLMRYFPPVVTGTVITVIGVSLMGVGINWAAGGQPIIGKLVDGVFVKIPNPDYGSPLSLA 159
            +    PPVVTG V+ VIG++L            PI  K V G         + S ++LA
Sbjct: 139 WIESLMPPVVTGAVVAVIGLNL-----------APIAVKGVSG-------SSFDSWMALA 180

Query: 160 IAAVVLVSILLITKYVKGFIANISVLMGMVVGFVI------ALSLGK-INFDGLGATEWF 212
                ++ +  +  + +G +  + +L+G+++ +V+       L LGK I+F  +    WF
Sbjct: 181 ----TILCVGGVAVFTRGMLQRLLILVGLLLAYVLYAVLTNGLGLGKPIDFSTVANAAWF 236

Query: 213 AVIKPFHYGWPQFDVGSIISMCLVMIVTMIESTGMFMALGDIVEKKVDDKTLARGLRVDG 272
            V  P H+  P F  G++  +  V I+ + E+ G   A+  +  + +D + + R    DG
Sbjct: 237 GV--P-HFAAPVFHAGAMALLAPVAIILVAENLGHIKAVSAMTGQNLD-RYIGRAFVGDG 292

Query: 273 LGTVIGGVFNTFPYTSFSQNVGLVGVTGIRSRYVCVAAGVILAAFGLFPKMAHVAASIPQ 332
           L T++ G       T++++N+G++ VT I S  V V A VI    G  PK   V  +IP 
Sbjct: 293 LATMLSGSVGGTGVTTYAENIGVMAVTKIYSTLVFVVAAVIAILLGFSPKFGAVILTIPG 352

Query: 333 FVLGGAGIVMFGMVAATGIKILA--KVDFNTNRNNLFIVAISIGVGMIPIVAPTFFDKMP 390
            VLGG  IV+FG++  +G +I    KVDF +N  NL + A+++ +G     A  F  K+ 
Sbjct: 353 AVLGGVSIVVFGLITISGARIWVENKVDF-SNNTNLIVAAVTLVLG-----AGDFTLKLG 406

Query: 391 GFLSTIFHSGILLASTMAVVLNVFFNGR 418
           GF       GI  A+  A++L+     R
Sbjct: 407 GFA----LGGIGTATFGAIILHALLKRR 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,354,925
Number of extensions: 57409
Number of successful extensions: 261
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,203,190
Effective search space: 419913310
Effective search space used: 419913310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)