BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0092.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro...    62   3e-11
gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro...    59   2e-10

>gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis
          protein I [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 55/82 (67%)

Query: 1  MKIANMKIGQRLAIGFGIVIVLLVAITALSNMQLGRLNDGINLITKDRYPKTVLANTIQI 60
          M+++N+ I  RL +GFG+++VL++A+ A    +LG+LN  +  +  D+YPKTV+A  I  
Sbjct: 1  MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60

Query: 61 QVNKIALDIRDIMLTGDADKIK 82
          Q+N IA  +R+I+L     +IK
Sbjct: 61 QLNLIARSVRNILLLKREPQIK 82


>gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis
          protein [Herbaspirillum seropedicae SmR1]
          Length = 583

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 49/81 (60%)

Query: 1  MKIANMKIGQRLAIGFGIVIVLLVAITALSNMQLGRLNDGINLITKDRYPKTVLANTIQI 60
          M+  N+ I  RLAI F I+I+++  I AL   +L  +N  ++L+  DRY K  + NTI  
Sbjct: 1  MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60

Query: 61 QVNKIALDIRDIMLTGDADKI 81
          +V+ +A+ +R+ +L  D  +I
Sbjct: 61 KVDDVAISLRNQLLMTDPAQI 81


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 572,182
Number of extensions: 21564
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)