BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0084.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311064|ref|YP_003775156.1| acetolactate synthase isozyme I...   125   2e-30
gi|300311584|ref|YP_003775676.1| pyruvate dehydrogenase [Herbasp...    78   5e-16

>gi|300311064|ref|YP_003775156.1| acetolactate synthase isozyme III
           large subunit [Herbaspirillum seropedicae SmR1]
          Length = 572

 Score =  125 bits (314), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 1/166 (0%)

Query: 1   MKAVDAAVYVLEKEGCLQAFGVPGAAINPFYSALKRHGGIQHILARHVEGASHMAEGYTR 60
           +   D  V  L +EG    FG PG A+   Y A+ +    QHIL RH + A H A+ Y+R
Sbjct: 6   LTGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAYSR 65

Query: 61  AKAGNIGICIGTSGPAGTDMITGLYSAQADSIPILCITGQAPRARLYKEDFQAVDIESIA 120
           + +  +G+ I TSGP  T+ +TGL +A  DSIP++ I+GQ P   + ++ FQ  D   I 
Sbjct: 66  S-SQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDTVGIT 124

Query: 121 KPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQXH 166
           +P  K    V++   +    ++AF++  +GRPGPVL+D+P D+  H
Sbjct: 125 RPCVKHNFLVKDVKDLAETVKKAFYIATTGRPGPVLVDIPKDITMH 170


>gi|300311584|ref|YP_003775676.1| pyruvate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 564

 Score = 77.8 bits (190), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 5   DAAVYVLEKEGCLQAFGVPGAAINPFYSALKRHGGIQHILARHVEGASHMAEGYTRAKAG 64
           D  +  L + G  Q FGV G A+NP   A++R   I+ I  RH EGA+  A G  +   G
Sbjct: 7   DILIDTLYEIGVRQIFGVVGDALNPLTDAIRRDKRIEWIGVRHEEGAALAAAGQAKL-TG 65

Query: 65  NIGICIGTSGPAGTDMITGLYSAQADSIPILCITGQAPRARLYKEDFQAVDIESIAKPVT 124
            + +C GT+GP    ++ GLY A+ D  P+L I+G  P A    +  Q    E + + V 
Sbjct: 66  RLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAAHRGTDYLQENSPELLFRDVA 125

Query: 125 KWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 163
            ++  +  P   P VF QA     + R G   +++P DV
Sbjct: 126 AYSQIITSPDQAPAVFHQAIAQAYAQR-GVAHLNIPADV 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 608,702
Number of extensions: 25363
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)