BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0080.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...   258   2e-70
gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...    76   2e-15

>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  258 bits (660), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/164 (75%), Positives = 133/164 (81%)

Query: 5   IRFYFRGETHQVDGLPNTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRGNELEL 64
           I+FYFRG+TH V G   TRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL+G +L L
Sbjct: 8   IQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLAL 67

Query: 65  KTVNSCIQFVPTLDGKALFTVEDLKQRDGCLHPAQQAMVECHGSQCGFCTPGFVMSLWGL 124
           KTVN+CIQF+PTLDG+ALFTVEDLKQ DG LHP QQAMVECHGSQCGFCTPGFVMSLWGL
Sbjct: 68  KTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWGL 127

Query: 125 YLKHEQDNVAPTTREIDDALSRRRPYWRKWRHCATTCRRRASWP 168
           YL+HEQD V P+ REIDDALS        +R      RR    P
Sbjct: 128 YLRHEQDGVTPSKREIDDALSGNLCRCTGYRPIIDAARRMGELP 171


>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 3   EPIRFYFRGETHQVDGLPNTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRGNEL 62
           EPI F+  G    +D +     +L  LR DL   G K GC  G+CGACTV+V  +     
Sbjct: 5   EPITFHVNGVPVSLD-IAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63

Query: 63  ELKTVNSCIQFVPTLDGKALFTVEDLKQRDGCLHPAQQAMVECHGSQCGFCTPGFVMSLW 122
            +       + V TLDG          ++DG L P QQA ++  G+QCG+C  G +M++ 
Sbjct: 64  VIPLAGVAARHVTTLDGL---------EQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIK 114

Query: 123 GLYLKHEQDNVAPTTREIDDALSR 146
            L L+    +      E+D  L R
Sbjct: 115 ALLLRSPTPSEDEIRHELDFNLCR 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 580,125
Number of extensions: 21865
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)