BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0078.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...   253   5e-69

>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  253 bits (647), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 145/164 (88%)

Query: 1   MPWLIALGTEIVLYGVDGQRIMPLEDFYIAYQKSAILPNEFVQAVRVPLPHKDVAFRVYK 60
           MPWLIALG +IVLY V GQR+MPLEDFY+AYQKSA+  +E VQAVR+PLP K++ FRVYK
Sbjct: 318 MPWLIALGAQIVLYSVRGQRVMPLEDFYLAYQKSALQADELVQAVRIPLPRKELRFRVYK 377

Query: 61  LSKRFDQDISAVCAAFAFRLEGGKVIDARMAYGGMAATPKRAAQAEAALNGKEWNEANVK 120
           LSKRFDQDISAVCAAFA +++G  ++ AR+AYGGMAATPKRAAQAEA L G  W+EA  +
Sbjct: 378 LSKRFDQDISAVCAAFALQMQGDTIVQARIAYGGMAATPKRAAQAEAVLQGGPWSEAQAQ 437

Query: 121 AAMLALAQDYAPLSDMRASSAYRMRTAQNLLYRYWLETRADAPL 164
           AAM ALAQDYAPLSDMRAS+AYR+RTAQNLLYRYWLETR+DAPL
Sbjct: 438 AAMAALAQDYAPLSDMRASAAYRLRTAQNLLYRYWLETRSDAPL 481


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 549,363
Number of extensions: 19851
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)