BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0076.p
         (635 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit ...  1110   0.0  
gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide de...    59   1e-09

>gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit B
           [Herbaspirillum seropedicae SmR1]
          Length = 789

 Score = 1110 bits (2872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/631 (84%), Positives = 585/631 (92%), Gaps = 3/631 (0%)

Query: 1   VLPPMHLTRGNPSEAFNTAPHKLKGKFDVGGQEQFYLEGQISYAIPKEGRGMHVYCSTQH 60
           VLPPMHL+RG P+ A   APH+L+G+FDVGGQEQFYLEGQISYAIPKEGRGMHVYCSTQH
Sbjct: 158 VLPPMHLSRGEPAIALALAPHRLRGQFDVGGQEQFYLEGQISYAIPKEGRGMHVYCSTQH 217

Query: 61  PSEMQHHIAEVLHVSSHDVLVECRRMGGGFGGKESQSALWACAAAVAAVRLRRPIKLRAD 120
           PSEMQHH+A VL ++SHDVLVECRRMGGGFGGKESQSALWACAAAVAA RL+RP+KLRAD
Sbjct: 218 PSEMQHHVATVLGLASHDVLVECRRMGGGFGGKESQSALWACAAAVAAARLQRPVKLRAD 277

Query: 121 RDDDMIVTGKRHCFAYDYEIGYDDNGRIVAAKIDMVSRAGFSADLSGPVATRAVCHFDNA 180
           RDDDM+VTGKRHCFAYDYEIGYDD+GRIVAAKI+M+SRAGFSADLSGPVATRAVCHFDNA
Sbjct: 278 RDDDMMVTGKRHCFAYDYEIGYDDHGRIVAAKIEMISRAGFSADLSGPVATRAVCHFDNA 337

Query: 181 YYLSDVEIHAMCGKTNTQSNTAFRGFGGPQGAIAIEYIIDEIARNLGKDALDVRRANFYG 240
           YYLSDV+I AMCGKTNTQSNTAFRGFGGPQGA+AIEYIID+IAR+LG+D L++RR NFYG
Sbjct: 338 YYLSDVDIRAMCGKTNTQSNTAFRGFGGPQGALAIEYIIDDIARHLGRDPLEIRRNNFYG 397

Query: 241 SSDADGPDARNTTHYGQKVEDNVIQALVSELERTSQYQERRLAIKAFNAGNTILKRGLAL 300
            SD +GP ARN THYGQKVEDN+I ALV +LER+S+YQERR A+ AFNAG+T+LK+GLAL
Sbjct: 398 PSDEEGPQARNVTHYGQKVEDNIIPALVDQLERSSRYQERRQAVAAFNAGSTVLKKGLAL 457

Query: 301 TPVKFGISFNVPHLNQAGSLVHVYTDGSVLVNHGGTEMGQGLNTKVAQVVANALGLPLER 360
           TPVKFGISFNVPHLNQAG+LVHVYTDGSVLVNHGGTEMGQGLNTKVAQVVA+ LG+PLER
Sbjct: 458 TPVKFGISFNVPHLNQAGALVHVYTDGSVLVNHGGTEMGQGLNTKVAQVVAHTLGVPLER 517

Query: 361 VRCTATDTSKIANTSATAASTGSDLNGKAAQDAALQIRARLAQVAAERFSTDVSEVRFAD 420
           VRC+ATDTSK+ANTSATAASTGSDLNGKAAQDAALQ+R RLAQVAA     + + VRFAD
Sbjct: 518 VRCSATDTSKVANTSATAASTGSDLNGKAAQDAALQVRTRLAQVAATLLGVEPTAVRFAD 577

Query: 421 GMVSAGTSSTASVTFEELVMQAYLKRVQLWSDGFYSTPKVHWNSKTMNGHPFFYFAYGAA 480
           G V AG  S A   F ELVM+AYL+RVQLWSDGFYSTPKVHW++K M+GHPFFYFAY AA
Sbjct: 578 GRVMAGAQSMA---FAELVMKAYLQRVQLWSDGFYSTPKVHWDAKRMHGHPFFYFAYAAA 634

Query: 481 VAEVVIDTLTGEWRLIRADSLYDAGESLNPAIDIGQVEGGFIQGMGWLTTEELWWNKDGK 540
           V+EVVIDTLTGEW+L++AD LYDAG+SLNPA+DIGQVEGGFIQGMGWLTTEELWWNKDGK
Sbjct: 635 VSEVVIDTLTGEWKLLQADLLYDAGQSLNPALDIGQVEGGFIQGMGWLTTEELWWNKDGK 694

Query: 541 LMTHAPSTYKIPAVSDCPTDFRTQLFKNSNVSDTIHRSKATGEPPLLLPFSVFLAIRDAV 600
           LMTHAPSTYKIPA+SDCP   RT+LF+N NVSDTIHRSKA GEPPLLLPFSVFLAIRDAV
Sbjct: 695 LMTHAPSTYKIPAISDCPARLRTELFQNRNVSDTIHRSKAVGEPPLLLPFSVFLAIRDAV 754

Query: 601 SAVGEHRVNPPLRAPATSEAILDAIDAVKAA 631
           SAVG HRVNPPLRAPATSEAILDA+DAV+AA
Sbjct: 755 SAVGGHRVNPPLRAPATSEAILDAVDAVRAA 785


>gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide
           dehydrogenase large subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 759

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%)

Query: 320 LVHVYTDGSVLVNHGGTEMGQGLNTKVAQVVANALGLPLERVRCTATDTSKIANTSATAA 379
            V +  +G VL  +G  ++G G+ T +AQ+VA  L L +E+V      T +  N   T A
Sbjct: 56  FVAILGEGQVLAFNGHVDLGTGIRTSLAQIVAEELSLSMEQVSMILGHTEEAPNQGPTIA 115

Query: 380 STGSDLNGKAAQDAALQIRARLAQVAAERFSTDVSEVRFADGMVSAGTSSTASVTFEELV 439
           S    ++    + AA Q R  L  +AA R++T V  +R   G +     +  ++++ EL+
Sbjct: 116 SATIQISAMPLRKAAAQAREHLLAMAAARWATPVGRLRVEAGCIIDADVAGRTISYFELL 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,881,706
Number of extensions: 75679
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 635
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 544
Effective length of database: 1,188,985
Effective search space: 646807840
Effective search space used: 646807840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)